Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Forward (+)

72896242 .. 72899454

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG422100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAGAAGGATCAGAAGGTAGCATCTGAAGACCCCAAGGTGGATATGTTCAAGGACGATGACGAGTTTGAAGAGTTCAACATCAATCTAGACGTTGTGAGAAATTCTAAAACTTTGATGGGCGATCTTAGGCCTTGGTCTCCTGAGCCAGATGGCGCCGTTTTGGAGGAGAGGCCGACCTCATCTTCTTCATCCGTGTTTTCAATTTCAACAAATCAGAGGGACGTTTCCGCTGAGTACTGGCGGAGAGAGGATGAGGCAATGCAGGGGGTTATAGCTCAGATCCAACGTACTCACGTCTCCGAGCAGAGAAGGAAAGCCACTATTGATTACGTTCAGAGGATCATTGGAGCTTGTATTGGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.96

Weight (kDa)

4.66

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	2 cut(s)	231, 244
AclWI	GGATC	3 cut(s)	18, 277, 350
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	239, 292
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	5 cut(s)	52, 71, 79, 204, 210
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	2 cut(s)	278, 353
AluI	AGCT	2 cut(s)	278, 353
Alw26I	GTCTC	2 cut(s)	144, 304
AlwI	GGATC	3 cut(s)	18, 277, 350
AoxI	GGCC	2 cut(s)	131, 173
ApoI	RAATTY	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	36
BccI	CCATC	2 cut(s)	112, 146
BceAI	ACGGC	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	144, 304
BfaI	CTAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	159
BmcAI	AGTACT	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	36, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	36, 134
BseGI	GGATG	2 cut(s)	191, 259
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	135, 225, 293
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	133, 175
BshNI	GGYRCC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	144, 304
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	133, 175
Bso31I	GGTCTC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	10, 124, 282, 342
BspACI	CCGC	2 cut(s)	231, 244
BspANI	GGCC	2 cut(s)	133, 175
BspCNI	CTCAG	3 cut(s)	136, 226, 292
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	3 cut(s)	18, 277, 350
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	36, 134
BssMI	GATC	4 cut(s)	10, 124, 282, 342
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	36, 134
Bst6I	CTCTTC	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	4 cut(s)	128, 144, 234, 279
BstF5I	GGATG	2 cut(s)	191, 259
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	4 cut(s)	13, 127, 285, 345
BstMAI	GTCTC	2 cut(s)	144, 304
BstMBI	GATC	4 cut(s)	10, 124, 282, 342
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	133, 175
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	191, 259
CfoI	GCGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	238, 291
CviJI	RGCY	6 cut(s)	133, 148, 175, 278, 320, 353
CviKI_1	RGCY	6 cut(s)	133, 148, 175, 278, 320, 353
CviQI	GTAC	2 cut(s)	238, 291
DdeI	CTNAG	4 cut(s)	128, 144, 234, 279
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	4 cut(s)	12, 126, 284, 344
DpnII	GATC	4 cut(s)	10, 124, 282, 342
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	36, 134
Eco147I	AGGCCT	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	36, 134
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	36, 134
Esp3I	CGTCTC	1 cut(s)	304
FaiI	YATR	2 cut(s)	47, 275
FaqI	GGGAC	1 cut(s)	236
FokI	GGATG	2 cut(s)	178, 266
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	133, 175
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
Hpy188I	TCNGA	6 cut(s)	15, 28, 219, 282, 304, 339
Hpy188III	TCNNGA	2 cut(s)	89, 143
HpyAV	CCTTC	2 cut(s)	10, 306
HpyCH4IV	ACGT	5 cut(s)	93, 225, 289, 297, 333
HpyCH4V	TGCA	1 cut(s)	265
HpyF3I	CTNAG	4 cut(s)	128, 144, 234, 279
HpySE526I	ACGT	5 cut(s)	93, 225, 289, 297, 333
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	10, 124, 282, 342
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	4 cut(s)	156, 162, 226, 251
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	5 cut(s)	93, 225, 289, 297, 333
MalI	GATC	4 cut(s)	12, 126, 284, 344
MboI	GATC	4 cut(s)	10, 124, 282, 342
MboII	GAAGA	4 cut(s)	41, 83, 177, 180
MflI	RGATCY	1 cut(s)	282
MluCI	AATT	2 cut(s)	103, 204
Mly113I	GGCGCC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	7 cut(s)	160, 165, 190, 213, 244, 250, 333
MspA1I	CMGCKG	1 cut(s)	233
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	4 cut(s)	10, 124, 282, 342
NlaIV	GGNNCC	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	133
PluTI	GGCGCC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	2 cut(s)	239, 292
RsaNI	GTAC	2 cut(s)	238, 291
Sau3AI	GATC	4 cut(s)	10, 124, 282, 342
ScaI	AGTACT	1 cut(s)	239
SfaNI	GCATC	1 cut(s)	32
SfoI	GGCGCC	1 cut(s)	157
Sse9I	AATT	2 cut(s)	103, 204
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	2 cut(s)	231, 244
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	133
StyI	CCWWGG	2 cut(s)	36, 134
TaiI	ACGT	5 cut(s)	96, 228, 292, 300, 336
TasI	AATT	2 cut(s)	103, 204
TatI	WGTACW	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	184
XapI	RAATTY	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	88
XspI	CTAG	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.