Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Reverse (-)

14927061 .. 14928248

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G175700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCGACGGAGCCCAAGCCAGTGACAGAGGTCGCGAAGATGGATCTGTTCGAAGACGACGACGAGTTCGAAGAGTTTGATATGAATGAAGAATGGGAGGACAAAGAGGAAGGCAAGGAAGTGGCACAGCAGTGGGAAGATGACTGGGACGACGACGACGTCAACGATGATTTCTCTCTGCAGCTGAGGAGGGAGCTGGAGAACAACACTGAGAAGAGCTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko03440 ko05169 map03050 map03440 map05169

Pfam Domains

Protein Families

DSS1_SEM1

Protein Analysis

76

Amino Acids

8.98

Weight (kDa)

4.05

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	35
AclWI	GGATC	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	159
AleI	CACNNNNGTG	1 cut(s)	130
AluBI	AGCT	4 cut(s)	184, 196, 219, 224
AluI	AGCT	4 cut(s)	184, 196, 219, 224
Alw21I	GWGCWC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	181
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AsuII	TTCGAA	2 cut(s)	51, 69
BanII	GRGCYC	2 cut(s)	15, 221
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	182
BlpI	GCTNAGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	12
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	220
Bpu14I	TTCGAA	2 cut(s)	51, 69
BsaHI	GRCGYC	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	20, 149
BseMII	CTCAG	2 cut(s)	176, 201
BseNI	ACTGG	2 cut(s)	20, 149
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	161
Bsp119I	TTCGAA	2 cut(s)	51, 69
Bsp1286I	GDGCHC	2 cut(s)	15, 221
Bsp143I	GATC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	220
Bsp68I	TCGCGA	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	177, 202
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	209
BspT104I	TTCGAA	2 cut(s)	51, 69
BsrI	ACTGG	2 cut(s)	20, 149
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	1 cut(s)	159
Bst6I	CTCTTC	2 cut(s)	66, 209
BstACI	GRCGYC	1 cut(s)	159
BstBI	TTCGAA	2 cut(s)	51, 69
BstDEI	CTNAG	3 cut(s)	185, 210, 220
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	3 cut(s)	27, 137, 207
BtuMI	TCGCGA	1 cut(s)	35
CviJI	RGCY	6 cut(s)	13, 19, 184, 196, 219, 224
CviKI_1	RGCY	6 cut(s)	13, 19, 184, 196, 219, 224
DdeI	CTNAG	3 cut(s)	185, 210, 220
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eam1104I	CTCTTC	2 cut(s)	66, 209
EarI	CTCTTC	2 cut(s)	66, 209
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	2 cut(s)	15, 221
Eco53kI	GAGCTC	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	219
EcoT38I	GRGCYC	2 cut(s)	15, 221
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	182
FriOI	GRGCYC	2 cut(s)	15, 221
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	6 cut(s)	10, 62, 65, 155, 158, 161
HpyAV	CCTTC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	181
HpyF3I	CTNAG	3 cut(s)	185, 210, 220
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	10, 193
LpnPI	CCDG	3 cut(s)	33, 130, 182
Lsp1109I	GCAGC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	6 cut(s)	49, 65, 83, 101, 149, 226
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	15, 221
MnlI	CCTC	5 cut(s)	22, 91, 100, 180, 183
MseI	TTAA	1 cut(s)	226
MslI	CAYNNNNRTG	1 cut(s)	130
MspA1I	CMGCKG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	35
NdeII	GATC	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	22
NruI	TCGCGA	1 cut(s)	35
NspV	TTCGAA	2 cut(s)	51, 69
OliI	CACNNNNGTG	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 66, 156, 162
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	183
PshAI	GACNNNNGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	184
RruI	TCGCGA	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	226
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	15, 221
SetI	ASST	6 cut(s)	33, 162, 186, 198, 221, 226
SfcI	CTRYAG	1 cut(s)	179
SfuI	TTCGAA	2 cut(s)	51, 69
SgeI	CNNG	7 cut(s)	28, 32, 46, 76, 127, 157, 209
SmiMI	CAYNNNNRTG	1 cut(s)	130
SstI	GAGCTC	1 cut(s)	221
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	51, 69
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TscAI	CASTG	3 cut(s)	27, 137, 214
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	98, 102
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	27, 137, 214
Tth111I	GACNNNGTC	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.