Rroxscaffold_3G00242680

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000819
Physical Location & Seq
Reverse (-)
35129613 .. 35137530
7918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242680.1

Sequence Viewer

Length: 252 bp
ATGGGCGATCTTAGGCCTTGGTCGCCTGAGCCAAACGGCACCATTTTGGAGGAGAGGCCGACCTCATCTTCTTCATCCGTGTTTTCAATTTCAACAAATCGAGAGGGACATTTCCGTCGAGTGCGGCGGAGAGCGGAGGAGGCAATGCAGGGGGTTATAGCTCGGATCCAACATACTCACGTCTCCGAGCTGAGAAGGAAAGCCGCCATTGATTACGTTCGGAGGATCATTGGAGCTTGTATTGGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.4

Weight (kDa)

10.58

Isoelectric Point (pI)

81.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 134
AciI CCGC 4 cut(s) 124, 127, 134, 204
AclWI GGATC 3 cut(s) 160, 173, 233
AgsI TTSAA 2 cut(s) 87, 93
AjiI CACGTC 1 cut(s) 181
AluBI AGCT 3 cut(s) 161, 190, 236
AluI AGCT 3 cut(s) 161, 190, 236
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 3 cut(s) 160, 173, 233
AoxI GGCC 2 cut(s) 14, 56
BamHI GGATCC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 187
BisI GCNGC 2 cut(s) 125, 204
BlsI GCNGC 2 cut(s) 126, 205
BmgBI CACGTC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 40, 167
Bpu10I CCTNAGC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 18, 182
BseRI GAGGAG 2 cut(s) 65, 152
BshFI GGCC 2 cut(s) 16, 58
BshNI GGYRCC 1 cut(s) 38
BslFI GGGAC 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 2 cut(s) 16, 58
Bsp143I GATC 3 cut(s) 7, 165, 225
BspACI CCGC 4 cut(s) 124, 127, 134, 204
BspANI GGCC 2 cut(s) 16, 58
BspCNI CTCAG 2 cut(s) 19, 183
BspLI GGNNCC 2 cut(s) 40, 167
BspPI GGATC 3 cut(s) 160, 173, 233
BspT107I GGYRCC 1 cut(s) 38
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 7, 165, 225
BssT1I CCWWGG 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 11, 27, 191
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 3 cut(s) 10, 168, 228
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 7, 165, 225
BstMWI GCNNNNNNNGC 2 cut(s) 22, 140
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 16, 58
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 74
CviJI RGCY 7 cut(s) 16, 31, 58, 161, 190, 203, 236
CviKI_1 RGCY 7 cut(s) 16, 31, 58, 161, 190, 203, 236
DdeI CTNAG 3 cut(s) 11, 27, 191
DpnI GATC 3 cut(s) 9, 167, 227
DpnII GATC 3 cut(s) 7, 165, 225
DrdI GACNNNNNNGTC 1 cut(s) 114
DseDI GACNNNNNNGTC 1 cut(s) 114
EciI GGCGGA 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 17
Eco147I AGGCCT 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 187
FaiI YATR 2 cut(s) 158, 174
FaqI GGGAC 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 125, 204
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 125, 204
GluI GCNGC 2 cut(s) 125, 204
HaeIII GGCC 2 cut(s) 16, 58
Hpy188I TCNGA 3 cut(s) 165, 187, 222
Hpy188III TCNNGA 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 2 cut(s) 180, 216
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 140
HpyF3I CTNAG 3 cut(s) 11, 27, 191
HpySE526I ACGT 2 cut(s) 180, 216
Kzo9I GATC 3 cut(s) 7, 165, 225
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 2 cut(s) 39, 134
MaeII ACGT 2 cut(s) 180, 216
MalI GATC 3 cut(s) 9, 167, 227
MbiI CCGCTC 1 cut(s) 134
MboI GATC 3 cut(s) 7, 165, 225
MboII GAAGA 2 cut(s) 60, 63
MflI RGATCY 1 cut(s) 165
MluCI AATT 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 7 cut(s) 43, 48, 73, 97, 130, 133, 216
MwoI GCNNNNNNNGC 2 cut(s) 22, 140
NdeII GATC 3 cut(s) 7, 165, 225
NlaIV GGNNCC 2 cut(s) 40, 167
PceI AGGCCT 1 cut(s) 16
PkrI GCNGC 2 cut(s) 126, 205
PspN4I GGNNCC 2 cut(s) 40, 167
PsuI RGATCY 1 cut(s) 165
SatI GCNGC 2 cut(s) 125, 204
Sau3AI GATC 3 cut(s) 7, 165, 225
SetI ASST 6 cut(s) 65, 163, 183, 192, 219, 238
SgeI CNNG 9 cut(s) 30, 38, 91, 113, 131, 161, 174, 191, 199
Sse9I AATT 1 cut(s) 87
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 4 cut(s) 124, 127, 134, 204
StuI AGGCCT 1 cut(s) 16
StyI CCWWGG 1 cut(s) 17
TaiI ACGT 2 cut(s) 183, 219
TaqI TCGA 2 cut(s) 100, 118
TasI AATT 1 cut(s) 87
TauI GCSGC 2 cut(s) 127, 206
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 2 cut(s) 67, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.