MD06G1177000.v1.1

proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000819
Physical Location & Seq
Reverse (-)
31690082 .. 31691363
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1177000.v1.1.491

Sequence Viewer

Length: 228 bp
ATGGCGGCGGAGCCCCAGGCGGTGACGGAGGTCGCGAAGATGGATCTGTTCGAAGACGACGACGAGTTCGAGGAGTTTGATGTCAACGAAGAATGGGAGGACAAAGAGGAAGGCAAGGAAGTGACACAGCAGTGGGAAGACGACTGGGATGATGACGATGTTAACGATGACTTCTCCCTGCAGCTGAGGAGGGAACTTGAGAACAATACTGAGAAGAGTTCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

76

Amino Acids

8.92

Weight (kDa)

4.05

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSS1_SEM1 PF05160 11 - 68 4.3e-18 DSS1/SEM1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 5, 8, 20
AclWI GGATC 1 cut(s) 51
AjnI CCWGG 1 cut(s) 15
AleI CACNNNNGTG 1 cut(s) 130
AluBI AGCT 2 cut(s) 184, 224
AluI AGCT 2 cut(s) 184, 224
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 181
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 2 cut(s) 60, 144
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 2 cut(s) 6, 182
BlsI GCNGC 2 cut(s) 7, 183
Bme1390I CCNGG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 2 cut(s) 60, 144
Bpu10I CCTNAGC 1 cut(s) 185
Bpu14I TTCGAA 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 176, 201
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 2 cut(s) 86, 202
BseXI GCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 43
Bsp68I TCGCGA 1 cut(s) 35
BspACI CCGC 3 cut(s) 5, 8, 20
BspCNI CTCAG 2 cut(s) 177, 202
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 12
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 51
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 51
BstDEI CTNAG 3 cut(s) 185, 210, 225
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 17
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 179
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 60, 144
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
BtuMI TCGCGA 1 cut(s) 35
CviJI RGCY 3 cut(s) 13, 184, 224
CviKI_1 RGCY 3 cut(s) 13, 184, 224
DdeI CTNAG 3 cut(s) 185, 210, 225
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 6, 182
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 2 cut(s) 6, 182
GluI GCNGC 2 cut(s) 6, 182
HincII GTYRAC 2 cut(s) 85, 163
HindII GTYRAC 2 cut(s) 85, 163
HpaI GTTAAC 1 cut(s) 163
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 85, 163
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 2 cut(s) 85, 163
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 3 cut(s) 185, 210, 225
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 2, 29, 130, 191
Lsp1109I GCAGC 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 22, 121
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 5 cut(s) 49, 65, 101, 149, 226
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 15
MnlI CCTC 6 cut(s) 22, 64, 91, 100, 180, 183
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 35
NdeII GATC 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 22, 121
NruI TCGCGA 1 cut(s) 35
NspV TTCGAA 1 cut(s) 51
OliI CACNNNNGTG 1 cut(s) 130
PcsI WCGNNNNNNNCGW 4 cut(s) 32, 57, 66, 162
PkrI GCNGC 2 cut(s) 7, 183
PshAI GACNNNNGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 184
RruI TCGCGA 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 130
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 2 cut(s) 6, 182
Sau3AI GATC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 15
SetI ASST 3 cut(s) 33, 186, 226
SfcI CTRYAG 1 cut(s) 179
SfuI TTCGAA 1 cut(s) 51
SgeI CNNG 9 cut(s) 28, 29, 46, 76, 82, 127, 157, 190, 209
SmiMI CAYNNNNRTG 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SsiI CCGC 3 cut(s) 5, 8, 20
StyD4I CCNGG 1 cut(s) 15
TaqI TCGA 2 cut(s) 51, 69
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 2 cut(s) 22, 121
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 2 cut(s) 22, 121
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.