MD08G1129000.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000819
Physical Location & Seq
Reverse (-)
12141518 .. 12142011
494 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1129000.v1.1.491

Sequence Viewer

Length: 195 bp
ATGGAGATATTGGGTGGTGACGTCTGTGCTGTCCTTGAAAGAGAATATCAAAATATGGCTGCTGAGTTTATGGTGAAAGATGTCCAGTTGATTTGGGCAGAGGTCAAGCTTGTAAAGTGCCTTGTGCAAAATATTGTGGTCGATATTTCCTTTAATCAGTTAGGAGGGCTATGTACACTATGCTTTCATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.22

Weight (kDa)

4.54

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 1 cut(s) 175
AgsI TTSAA 1 cut(s) 38
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 29, 85
BbvI GCAGC 1 cut(s) 46
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 173
BsrI ACTGG 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 21
BstAUI TGTACA 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 187
Csp6I GTAC 1 cut(s) 174
CviAII CATG 1 cut(s) 188
CviJI RGCY 3 cut(s) 59, 109, 169
CviKI_1 RGCY 3 cut(s) 59, 109, 169
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 63
FaeI CATG 1 cut(s) 191
FaiI YATR 5 cut(s) 56, 71, 172, 181, 189
FatI CATG 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 191
HindIII AAGCTT 1 cut(s) 107
HphI GGTGA 2 cut(s) 29, 85
Hpy166II GTNNAC 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 191
LpnPI CCDG 1 cut(s) 98
Lsp1109I GCAGC 1 cut(s) 46
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 17
MnlI CCTC 2 cut(s) 94, 158
MseI TTAA 1 cut(s) 153
NlaIII CATG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 17
PagI TCATGA 1 cut(s) 187
PkrI GCNGC 1 cut(s) 61
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 60
SetI ASST 3 cut(s) 24, 105, 111
SgeI CNNG 5 cut(s) 47, 97, 118, 122, 134
SspI AATATT 1 cut(s) 133
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 141
TatI WGTACW 1 cut(s) 173
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 176
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.