RLG00000021995

26S proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000819
Physical Location & Seq
Forward (+)
79805206 .. 79807135
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021995

Sequence Viewer

Length: 771 bp
ATGCTTGATACTATGTGTGTTATATGTGGTTATCTTGGTTGCTATATGGATCTACTGAGCAATGAGAGTGTTTTGAGTAAGAAGGTTTTGTTTATGAGACAGGGTTATGGTGATGAAAGGAACATTATATGCATAATGATAACTGTTACCGCTCATGCTGTTCCTAAACTGAATGTAAGGCTAGTTGACTGGGTTGCTTTCTTCATACTGACAGAGTGGGACGAGAAAGAAGAAGGAAAAGAAGCACTGCAGCAATGGGAGGATGATTGGGATGATGATGATGTCAATGATGACTTCTCTGTGCAGCTGAAGAAAGAACTGGAGAGCAACACCGGGAAGAAGCAACACTATGCACTGCATCACGTGTTATCTGAAGGTGCTGTCTTCCTGACATCCATTTTCATCATCTCAAAAACCTCCTACCCTAGGCTGCAACTCCTCTCACAGATCGTCTCACGGATTTACAGCTCAACCTTAATTCTTAAAGCAACCTTTATCTCCACCCCCATTCTCGGGTTTTGCCAGAAGCAAAATTCTCTGCTAACTCTCGTAGTGTCTATAGCCTGCATCCGAATGATTGAGAACAAATACCAACAACCACCACCACCATCACCAGTTAACCACCAATACCATACCAGCTTTCTAACCTCTCCAACTTATGGGCAAGCCATAGGCCTCAACCACAAAGTTGAAGGGAAAGCCGGTATTCCTGTTGGTATTTCTCTGGTTGTGTCTGCTTGGACTAAACGTGTATACTTTGTACTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

257

Amino Acids

29.0

Weight (kDa)

6.16

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSS1_SEM1 PF05160 71 - 108 3.7e-11 DSS1/SEM1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 659
AccBSI CCGCTC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 753
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 2 cut(s) 329, 393
AcvI CACGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 762
AfiI CCNNNNNNNGG 4 cut(s) 426, 512, 513, 659
AflIII ACRYGT 2 cut(s) 363, 748
AgsI TTSAA 1 cut(s) 692
AluBI AGCT 3 cut(s) 307, 468, 639
AluI AGCT 3 cut(s) 307, 468, 639
Alw26I GTCTC 2 cut(s) 91, 457
AlwI GGATC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 1 cut(s) 673
ApeKI GCWGC 3 cut(s) 250, 304, 430
ApoI RAATTY 1 cut(s) 532
AspA2I CCTAGG 1 cut(s) 425
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 122, 603
AvaI CYCGRG 1 cut(s) 512
AvrII CCTAGG 1 cut(s) 425
BbrPI CACGTG 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 376
BbvI GCAGC 3 cut(s) 262, 316, 417
BccI CCATC 1 cut(s) 616
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 91, 457
BfaI CTAG 2 cut(s) 182, 426
BfmI CTRYAG 2 cut(s) 248, 558
BisI GCNGC 3 cut(s) 251, 305, 431
BlnI CCTAGG 1 cut(s) 425
BlsI GCNGC 3 cut(s) 252, 306, 432
Bme1390I CCNGG 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 512
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 367, 576
BmuI ACTGGG 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 334
BsaAI YACGTR 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 425
Bsc4I CCNNNNNNNGG 4 cut(s) 426, 512, 513, 659
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 3 cut(s) 194, 324, 614
Bse3DI GCAATG 2 cut(s) 67, 260
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 4 cut(s) 268, 277, 392, 567
BseLI CCNNNNNNNGG 4 cut(s) 426, 512, 513, 659
BseMI GCAATG 2 cut(s) 67, 260
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 3 cut(s) 194, 324, 614
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 3 cut(s) 262, 316, 417
BsgI GTGCAG 1 cut(s) 323
BshFI GGCC 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 2 cut(s) 333, 702
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 4 cut(s) 426, 512, 513, 659
BsmAI GTCTC 2 cut(s) 91, 457
BsmBI CGTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 1 cut(s) 675
BsoBI CYCGRG 1 cut(s) 512
Bsp143I GATC 2 cut(s) 49, 447
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 675
BspCNI CTCAG 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 252
BspPI GGATC 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 67, 260
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 3 cut(s) 194, 324, 614
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 2 cut(s) 49, 447
BssNAI GTATAC 1 cut(s) 754
BssT1I CCWWGG 1 cut(s) 425
Bst1107I GTATAC 1 cut(s) 754
Bst4CI ACNGT 1 cut(s) 145
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 565, 666
BstDEI CTNAG 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 424
BstF5I GGATG 4 cut(s) 268, 277, 392, 567
BstKTI GATC 2 cut(s) 52, 450
BstMAI GTCTC 2 cut(s) 91, 457
BstMBI GATC 2 cut(s) 49, 447
BstSCI CCNGG 1 cut(s) 332
BstSFI CTRYAG 2 cut(s) 248, 558
BstV1I GCAGC 3 cut(s) 262, 316, 417
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BstZ17I GTATAC 1 cut(s) 754
BsuRI GGCC 1 cut(s) 675
BtsCI GGATG 4 cut(s) 268, 277, 392, 567
BtsI GCAGTG 2 cut(s) 245, 353
BtsIMutI CAGTG 2 cut(s) 245, 353
Cac8I GCNNGC 2 cut(s) 565, 666
Cfr10I RCCGGY 1 cut(s) 701
Csp6I GTAC 1 cut(s) 761
CviAII CATG 1 cut(s) 155
CviJI RGCY 9 cut(s) 181, 307, 430, 468, 563, 639, 668, 675, 701
CviKI_1 RGCY 9 cut(s) 181, 307, 430, 468, 563, 639, 668, 675, 701
CviQI GTAC 1 cut(s) 761
DdeI CTNAG 1 cut(s) 56
DpnI GATC 2 cut(s) 51, 449
DpnII GATC 2 cut(s) 49, 447
Eco130I CCWWGG 1 cut(s) 425
Eco147I AGGCCT 1 cut(s) 675
Eco57I CTGAAG 2 cut(s) 329, 393
Eco72I CACGTG 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 512
EcoNI CCTNNNNNAGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 457
FaeI CATG 1 cut(s) 158
FaqI GGGAC 1 cut(s) 233
FatI CATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 3 cut(s) 251, 305, 431
FokI GGATG 4 cut(s) 275, 284, 379, 554
Fsp4HI GCNGC 3 cut(s) 251, 305, 431
FspBI CTAG 2 cut(s) 182, 426
GluI GCNGC 3 cut(s) 251, 305, 431
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 675
HapII CCGG 2 cut(s) 333, 702
Hin1II CATG 1 cut(s) 158
HincII GTYRAC 2 cut(s) 187, 619
HindII GTYRAC 2 cut(s) 187, 619
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 2 cut(s) 333, 702
HphI GGTGA 2 cut(s) 122, 603
Hpy166II GTNNAC 3 cut(s) 187, 619, 754
Hpy188I TCNGA 2 cut(s) 373, 572
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 3 cut(s) 187, 619, 754
HpyAV CCTTC 4 cut(s) 76, 227, 368, 686
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 363, 748
HpyCH4V TGCA 7 cut(s) 132, 250, 304, 353, 358, 433, 567
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 2 cut(s) 363, 748
Hsp92II CATG 1 cut(s) 158
KspAI GTTAAC 1 cut(s) 619
Kzo9I GATC 2 cut(s) 49, 447
Lsp1109I GCAGC 3 cut(s) 262, 316, 417
LweI GCATC 2 cut(s) 367, 576
MaeI CTAG 2 cut(s) 182, 426
MaeII ACGT 2 cut(s) 363, 748
MaeIII GTNAC 1 cut(s) 145
MalI GATC 2 cut(s) 51, 449
MbiI CCGCTC 1 cut(s) 152
MboI GATC 2 cut(s) 49, 447
MboII GAAGA 5 cut(s) 193, 242, 322, 349, 376
MflI RGATCY 1 cut(s) 49
MluCI AATT 2 cut(s) 477, 532
MmeI TCCRAC 1 cut(s) 677
MnlI CCTC 5 cut(s) 253, 427, 449, 658, 686
Mph1103I ATGCAT 1 cut(s) 134
MseI TTAA 3 cut(s) 476, 483, 618
MslI CAYNNNNRTG 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 2 cut(s) 333, 702
MspR9I CCNGG 1 cut(s) 334
NciI CCSGG 1 cut(s) 334
NdeII GATC 2 cut(s) 49, 447
NlaIII CATG 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 134
PceI AGGCCT 1 cut(s) 675
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 3 cut(s) 252, 306, 432
PmaCI CACGTG 1 cut(s) 364
PmlI CACGTG 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 364
PspCI CACGTG 1 cut(s) 364
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
RseI CAYNNNNRTG 1 cut(s) 572
SaqAI TTAA 3 cut(s) 476, 483, 618
SatI GCNGC 3 cut(s) 251, 305, 431
Sau3AI GATC 2 cut(s) 49, 447
ScrFI CCNGG 1 cut(s) 334
SfaNI GCATC 2 cut(s) 367, 576
SfcI CTRYAG 2 cut(s) 248, 558
SmiMI CAYNNNNRTG 1 cut(s) 572
Sse9I AATT 2 cut(s) 477, 532
SseBI AGGCCT 1 cut(s) 675
SsiI CCGC 1 cut(s) 150
SspMI CTAG 2 cut(s) 182, 426
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 366, 751
TasI AATT 2 cut(s) 477, 532
TatI WGTACW 1 cut(s) 760
Tru1I TTAA 3 cut(s) 476, 483, 618
Tru9I TTAA 3 cut(s) 476, 483, 618
TscAI CASTG 2 cut(s) 252, 360
TseI GCWGC 3 cut(s) 250, 304, 430
TspDTI ATGAA 3 cut(s) 129, 193, 391
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 2 cut(s) 252, 360
Van91I CCANNNNNTGG 1 cut(s) 659
XagI CCTNNNNNAGG 1 cut(s) 424
XapI RAATTY 1 cut(s) 532
XmaJI CCTAGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 2 cut(s) 182, 426
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.