pycom11g08620

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000819
Physical Location & Seq
Reverse (-)
6722182 .. 6723819
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08620.1

Sequence Viewer

Length: 843 bp
ATGATGAATTGGCCACTTTGCCACTCTCTCATTTTTGTTCTCGTGCGTGCGTTTTGTGTGGGAATTCATTTTTCACTTTCCTCTTTCTTTTCTTCTGTCTTTCCGTTTCTCTCTATTTCTCCGTTTGTCTTTTGGTTTCGATTCCGATCGGATCGTGTGGAAGGGTGTTTGGCATGTTTTTCTGGCTGTTTTCCACGAACGAATCGCTCTGTTTCAGGAAACATTCATCTTCGAATTTTAGGGTTTTATTCTGCGAGCTTCCAAGCCCTTTTTGGGTCAGGATTAGATATGGATGGACATGATTACTTTTTGGGTTTACTTTGCCTGTTTCAGTTAGGAGGATTTAGTACTCTGCACTTCCTTGAACAGGTTGATAATTATATTGGCAAAAATCATCTCTTCAAGCGGAGTATTATTCTGATAAAAACCTGGTGCTACCATGAGAGTCGTATTCTTGGGGCTCATCATGGGTTGATTTCAACATATGCTTTGGAAATATTAATCCTATATGTTTTCCATTTTTTCCATTCGTCACTGGATGACCCTCTGGCAGTCCTTTATAGATTTTTGGATTACTTAAGCAAATTTGACTGGGAGAACTATTGTATAAGTTCAAACGGACCAGTATGCAAATCATCCTTGCCTGATATAGTGGCTGAGGCACCCGAAAACGAGAGAGATGATCTACTGCTGAGTGAAGAATTTATTAGAAATTGTGTGGAAATGTTCTCTGTTCCAGCAAAGGGGAATGAGACAAACTTGCGAGCTTTTTCCCTGAAGCATCTTAATTTAATACCCACTAAAGCAGGACAACAACCTTGGGCGAAGTGTCAGCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_assoc

Protein Analysis

281

Amino Acids

32.09

Weight (kDa)

6.85

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 128 - 265 1.3e-68 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 661
AciI CCGC 1 cut(s) 406
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 4 cut(s) 63, 234, 584, 701
AcuI CTGAAG 1 cut(s) 797
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 3 cut(s) 273, 367, 743
AflII CTTAAG 1 cut(s) 577
AgsI TTSAA 4 cut(s) 365, 403, 480, 615
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 2 cut(s) 258, 767
AluI AGCT 2 cut(s) 258, 767
Alw26I GTCTC 1 cut(s) 746
AlwI GGATC 1 cut(s) 159
AoxI GGCC 1 cut(s) 11
ApoI RAATTY 4 cut(s) 63, 234, 584, 701
AseI ATTAAT 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 620
AsuII TTCGAA 1 cut(s) 232
AvaII GGWCC 1 cut(s) 620
BalI TGGCCA 1 cut(s) 13
BanI GGYRCC 1 cut(s) 661
BanII GRGCYC 1 cut(s) 463
BauI CACGAG 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 657
BccI CCATC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 746
BfrI CTTAAG 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 430
Bme18I GGWCC 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 1 cut(s) 430
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 1 cut(s) 790
BmuI ACTGGG 1 cut(s) 601
Bpu10I CCTNAGC 1 cut(s) 657
Bpu14I TTCGAA 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 818
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 367, 743
Bse1I ACTGG 3 cut(s) 540, 596, 623
Bse8I GATNNNNATC 1 cut(s) 145
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 1 cut(s) 818
BseGI GGATG 3 cut(s) 298, 544, 635
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 3 cut(s) 273, 367, 743
BseMII CTCAG 2 cut(s) 648, 683
BseNI ACTGG 3 cut(s) 540, 596, 623
BsgI GTGCAG 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 661
BsiEI CGRYCG 1 cut(s) 149
BslI CCNNNNNNNGG 3 cut(s) 273, 367, 743
BsmAI GTCTC 1 cut(s) 746
BsnI GGCC 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 3 cut(s) 146, 151, 682
BspACI CCGC 1 cut(s) 406
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 2 cut(s) 649, 684
BspLI GGNNCC 1 cut(s) 663
BspPI GGATC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 661
BspTI CTTAAG 1 cut(s) 577
BsrI ACTGG 3 cut(s) 540, 596, 623
BssECI CCNNGG 1 cut(s) 818
BssMI GATC 3 cut(s) 146, 151, 682
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 818
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 430
Bst6I CTCTTC 1 cut(s) 404
BstAFI CTTAAG 1 cut(s) 577
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 3 cut(s) 48, 256, 765
BstDEI CTNAG 2 cut(s) 657, 692
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 3 cut(s) 298, 544, 635
BstKTI GATC 3 cut(s) 149, 154, 685
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 3 cut(s) 146, 151, 682
BstMCI CGRYCG 1 cut(s) 149
BstNI CCWGG 1 cut(s) 430
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 428
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 3 cut(s) 298, 544, 635
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 3 cut(s) 48, 256, 765
Cfr13I GGNCC 1 cut(s) 620
CsiI ACCWGGT 1 cut(s) 428
Csp6I GTAC 1 cut(s) 348
CviAII CATG 4 cut(s) 174, 299, 440, 467
CviJI RGCY 7 cut(s) 13, 186, 258, 266, 461, 656, 767
CviKI_1 RGCY 7 cut(s) 13, 186, 258, 266, 461, 656, 767
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 2 cut(s) 657, 692
DpnI GATC 3 cut(s) 148, 153, 684
DpnII GATC 3 cut(s) 146, 151, 682
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 818
Eco24I GRGCYC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 620
Eco57I CTGAAG 1 cut(s) 797
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoRI GAATTC 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 818
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 818
FaeI CATG 4 cut(s) 177, 302, 443, 470
FatI CATG 4 cut(s) 173, 298, 439, 466
FauNDI CATATG 1 cut(s) 484
FokI GGATG 3 cut(s) 305, 551, 622
FriOI GRGCYC 1 cut(s) 463
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 4 cut(s) 177, 302, 443, 470
HinfI GANTC 3 cut(s) 141, 202, 445
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 3 cut(s) 146, 151, 420
Hpy188III TCNNGA 2 cut(s) 216, 279
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 355, 630
HpyF3I CTNAG 2 cut(s) 657, 692
Hsp92II CATG 4 cut(s) 177, 302, 443, 470
Kzo9I GATC 3 cut(s) 146, 151, 682
LweI GCATC 1 cut(s) 790
MabI ACCWGGT 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 531
MalI GATC 3 cut(s) 148, 153, 684
MboI GATC 3 cut(s) 146, 151, 682
MboII GAAGA 4 cut(s) 84, 221, 391, 710
MhlI GDGCHC 1 cut(s) 463
MlsI TGGCCA 1 cut(s) 13
MluCI AATT 8 cut(s) 7, 63, 234, 376, 584, 701, 712, 787
MluNI TGGCCA 1 cut(s) 13
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 4 cut(s) 91, 332, 555, 652
Mox20I TGGCCA 1 cut(s) 13
MscI TGGCCA 1 cut(s) 13
MseI TTAA 4 cut(s) 500, 578, 786, 791
Msp20I TGGCCA 1 cut(s) 13
MspCI CTTAAG 1 cut(s) 577
MspR9I CCNGG 1 cut(s) 430
MvaI CCWGG 1 cut(s) 430
NdeI CATATG 1 cut(s) 484
NdeII GATC 3 cut(s) 146, 151, 682
NlaIII CATG 4 cut(s) 177, 302, 443, 470
NlaIV GGNNCC 1 cut(s) 663
NmuCI GTSAC 1 cut(s) 531
NspI RCATGY 1 cut(s) 177
NspV TTCGAA 1 cut(s) 232
PfeI GAWTC 2 cut(s) 141, 202
Ple19I CGATCG 1 cut(s) 149
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
PshBI ATTAAT 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 1 cut(s) 620
PvuI CGATCG 1 cut(s) 149
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 4 cut(s) 500, 578, 786, 791
Sau3AI GATC 3 cut(s) 146, 151, 682
Sau96I GGNCC 1 cut(s) 620
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 1 cut(s) 463
SetI ASST 5 cut(s) 260, 372, 431, 769, 820
SexAI ACCWGGT 1 cut(s) 428
SfaNI GCATC 1 cut(s) 790
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 577
SmoI CTYRAG 1 cut(s) 577
Sse9I AATT 8 cut(s) 7, 63, 234, 376, 584, 701, 712, 787
SsiI CCGC 1 cut(s) 406
SspI AATATT 1 cut(s) 498
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 1 cut(s) 818
TaqI TCGA 2 cut(s) 139, 232
TasI AATT 8 cut(s) 7, 63, 234, 376, 584, 701, 712, 787
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 2 cut(s) 141, 202
Tru1I TTAA 4 cut(s) 500, 578, 786, 791
Tru9I TTAA 4 cut(s) 500, 578, 786, 791
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 531
Tsp45I GTSAC 1 cut(s) 531
TspDTI ATGAA 3 cut(s) 20, 56, 215
TspGWI ACGGA 3 cut(s) 93, 111, 633
TspRI CASTG 1 cut(s) 540
Vha464I CTTAAG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 620
VspI ATTAAT 1 cut(s) 500
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 4 cut(s) 63, 234, 584, 701
XceI RCATGY 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.