Rh2DG554400

26S proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000819
Physical Location & Seq
Forward (+)
78341987 .. 78371048
29062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG554400.1

Sequence Viewer

Length: 360 bp
ATGGTACCGTTAACATCAAATGCATACCAACCCAGTACTTCCTCTCGGTGGCCATCCGGGCATCATCCTCAACTCTCGACACTGAGCCTTCCCGGGTCAAACCCAACAGCCACACATCTGAGCACCCGTCGTGGCATTGTTCCAATGGAGAAGGATCAGAAGGTAGCATCTGAAGACCCCAAGGTGGATATGTTCGAGGACGATGACGAGTTTGAAGAGTTCAACATCAATCTAGGTTGCTTGATTTCTGCTATACTTCCCCATGAAACTAGCAAGTTTATGACTGAGCCCGGCTCAAGTGGACTGAAGATTGGTCCTTTGGTACTTGCTGGGAGTTGCACATCAAGGATTCCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

119

Amino Acids

12.82

Weight (kDa)

5.21

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 50
AcuI CTGAAG 2 cut(s) 192, 326
AfaI GTAC 3 cut(s) 6, 37, 324
AfiI CCNNNNNNNGG 2 cut(s) 48, 184
AgsI TTSAA 2 cut(s) 215, 223
AjnI CCWGG 1 cut(s) 352
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 50
Asp718I GGTACC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 4 cut(s) 58, 93, 94, 291
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 52
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 4 cut(s) 58, 93, 94, 291
BfaI CTAG 2 cut(s) 233, 270
BglI GCCNNNNNGGC 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 37
Bme1390I CCNGG 5 cut(s) 58, 93, 94, 291, 354
Bme18I GGWCC 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 5 cut(s) 58, 93, 94, 291, 354
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 2 cut(s) 70, 176
BmuI ACTGGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpuEI CTTGAG 1 cut(s) 280
BpuMI CCSGG 4 cut(s) 58, 93, 94, 291
BsaJI CCNNGG 2 cut(s) 92, 180
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 184
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 92, 180
BseGI GGATG 2 cut(s) 53, 64
BseLI CCNNNNNNNGG 2 cut(s) 48, 184
BseMII CTCAG 3 cut(s) 74, 110, 276
BseNI ACTGG 1 cut(s) 33
BseYI CCCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 52
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 3 cut(s) 57, 93, 291
BslI CCNNNNNNNGG 2 cut(s) 48, 184
BsnI GGCC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 125, 291
Bsp143I GATC 1 cut(s) 154
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 3 cut(s) 75, 111, 277
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 92, 180
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 83, 119, 285
BstF5I GGATG 2 cut(s) 53, 64
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 5 cut(s) 56, 91, 92, 289, 352
BstV2I GAAGAC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 52
BtsCI GGATG 2 cut(s) 53, 64
BtsIMutI CAGTG 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 314
Cfr9I CCCGGG 1 cut(s) 92
Csp6I GTAC 3 cut(s) 5, 36, 323
CviAII CATG 1 cut(s) 263
CviJI RGCY 5 cut(s) 52, 87, 110, 289, 294
CviKI_1 RGCY 5 cut(s) 52, 87, 110, 289, 294
CviQI GTAC 3 cut(s) 5, 36, 323
DdeI CTNAG 3 cut(s) 83, 119, 285
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 192, 326
Eco88I CYCGRG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 266
FaiI YATR 5 cut(s) 25, 191, 254, 264, 281
FatI CATG 1 cut(s) 262
FokI GGATG 2 cut(s) 40, 51
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 2 cut(s) 233, 270
GsaI CCCAGC 1 cut(s) 333
HaeIII GGCC 1 cut(s) 52
HapII CCGG 3 cut(s) 57, 93, 291
Hin1II CATG 1 cut(s) 266
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 349
HpaI GTTAAC 1 cut(s) 12
HpaII CCGG 3 cut(s) 57, 93, 291
Hpy166II GTNNAC 2 cut(s) 12, 302
Hpy188I TCNGA 3 cut(s) 120, 159, 172
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 2 cut(s) 12, 302
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 98, 145, 154
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 23, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 3 cut(s) 83, 119, 285
Hsp92II CATG 1 cut(s) 266
KpnI GGTACC 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 6 cut(s) 46, 70, 106, 304, 315, 339
LweI GCATC 2 cut(s) 70, 176
MaeI CTAG 2 cut(s) 233, 270
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 185, 227, 319
MhlI GDGCHC 2 cut(s) 125, 291
MlsI TGGCCA 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 52
MnlI CCTC 3 cut(s) 52, 78, 190
Mox20I TGGCCA 1 cut(s) 52
Mph1103I ATGCAT 1 cut(s) 25
MscI TGGCCA 1 cut(s) 52
MseI TTAA 2 cut(s) 11, 358
Msp20I TGGCCA 1 cut(s) 52
MspI CCGG 3 cut(s) 57, 93, 291
MspR9I CCNGG 5 cut(s) 58, 93, 94, 291, 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 58
NciI CCSGG 4 cut(s) 58, 93, 94, 291
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 314
RsaI GTAC 3 cut(s) 6, 37, 324
RsaNI GTAC 3 cut(s) 5, 36, 323
SaqAI TTAA 2 cut(s) 11, 358
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 37
ScrFI CCNGG 5 cut(s) 58, 93, 94, 291, 354
SduI GDGCHC 2 cut(s) 125, 291
SetI ASST 4 cut(s) 165, 186, 238, 358
SfaNI GCATC 2 cut(s) 70, 176
SinI GGWCC 1 cut(s) 314
SmaI CCCGGG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SspMI CTAG 2 cut(s) 233, 270
StyD4I CCNGG 5 cut(s) 56, 91, 92, 289, 352
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 77, 195
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 2 cut(s) 11, 358
Tru9I TTAA 2 cut(s) 11, 358
TscAI CASTG 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 279
TspMI CCCGGG 1 cut(s) 92
TspRI CASTG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 314
XmaI CCCGGG 1 cut(s) 92
XspI CTAG 2 cut(s) 233, 270
ZrmI AGTACT 1 cut(s) 37
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.