Prupe.3G282400_v2.0.a1

26S proteasome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000819
Physical Location & Seq
Forward (+)
25705969 .. 25707711
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G282400.2

Sequence Viewer

Length: 222 bp
ATGGAGAAGGATCAAAAGGTAGCATCCGAAGACCCGAAGATAGATTTGTTTGAAGACGACGACGAGTTCGAAGAATTCAACATCAACGAAGAGTGGGATGAGAAGGAAGAAGGGAAAGATTCAGCACAGCAATGGGAGGATGATTGGGATGATGATGATGTCAACGATGACTTCTCTCTGCAGCTGAAGAAGGAACTAGAGAACAATGCTGAGAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko03440 ko05169 map03050 map03440 map05169
Pfam Domains
Protein Families
DSS1_SEM1

Protein Analysis

74

Amino Acids

8.78

Weight (kDa)

4.05

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 53, 79
AluBI AGCT 2 cut(s) 184, 219
AluI AGCT 2 cut(s) 184, 219
AlwI GGATC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AsuII TTCGAA 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 36, 60
BbvI GCAGC 1 cut(s) 193
BfaI CTAG 2 cut(s) 197, 220
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmsI GCATC 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 36, 60
Bpu14I TTCGAA 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 137
BseGI GGATG 4 cut(s) 23, 103, 145, 154
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 137
BssMI GATC 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 84, 209
BstBI TTCGAA 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 4 cut(s) 23, 103, 145, 154
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 36, 60
BtsCI GGATG 4 cut(s) 23, 103, 145, 154
CviJI RGCY 2 cut(s) 184, 219
CviKI_1 RGCY 2 cut(s) 184, 219
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 84, 209
EarI CTCTTC 2 cut(s) 84, 209
Eco57I CTGAAG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 4 cut(s) 10, 110, 152, 161
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 2 cut(s) 197, 220
GluI GCNGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 3 cut(s) 97, 104, 184
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 210
Kzo9I GATC 1 cut(s) 10
LguI GCTCTTC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 32
MaeI CTAG 2 cut(s) 197, 220
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 7 cut(s) 41, 49, 65, 83, 101, 119, 199
MluCI AATT 1 cut(s) 74
MnlI CCTC 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 184
NdeII GATC 1 cut(s) 10
NspV TTCGAA 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 209
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 1 cut(s) 10
SetI ASST 3 cut(s) 21, 186, 221
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 179
SfuI TTCGAA 1 cut(s) 69
SgeI CNNG 3 cut(s) 46, 76, 209
SmiMI CAYNNNNRTG 1 cut(s) 130
Sse9I AATT 1 cut(s) 74
SspMI CTAG 2 cut(s) 197, 220
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 74
TfiI GAWTC 1 cut(s) 119
TseI GCWGC 1 cut(s) 181
XapI RAATTY 1 cut(s) 74
XspI CTAG 2 cut(s) 197, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.