Rroxscaffold_4G00331170

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000819
Physical Location & Seq
Reverse (-)
64985155 .. 64986803
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331170.1

Sequence Viewer

Length: 336 bp
ATGGGGGACTCGAGATTTCAAACCACTAACCTCTCTATTTTGATCGTATCGAAACTTTTTTTTGCAGTTAAGCTTGTAAAGTGCCTTGTGCAAAATATTTTGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACGTTATGCTTTCTTAAGCAGGTTGATCGCCTCATTGGCAAACATCATCTCTTTAAACGTAGTATCATACCGATTAAGGCATGGTGCTATTGTGAGAGTCGAATTCTCGATGCCCATCACGGTTTGATATCTACGTATGGTTTGGTGACCTTAGTTCTTTTTATCTACGTGTCATTGTTTCAGGTGAAAGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

9.27

Isoelectric Point (pI)

22.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 58 - 103 1.2e-20 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 240
AfaI GTAC 1 cut(s) 139
AflII CTTAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 20, 118
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 10
ApoI RAATTY 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 295, 334
AvaI CYCGRG 1 cut(s) 10
BccI CCATC 1 cut(s) 261
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BfrI CTTAAG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 10
BmsI GCATC 1 cut(s) 238
BsaAI YACGTR 2 cut(s) 273, 307
BsaBI GATNNNNATC 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 2 cut(s) 42, 163
BspMI ACCTGC 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 152
BssMI GATC 2 cut(s) 42, 163
Bst4CI ACNGT 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 152
BstBAI YACGTR 2 cut(s) 273, 307
BstDEI CTNAG 1 cut(s) 289
BstEII GGTNACC 1 cut(s) 283
BstKTI GATC 2 cut(s) 45, 166
BstMBI GATC 2 cut(s) 42, 163
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstPI GGTNACC 1 cut(s) 283
BstSNI TACGTA 1 cut(s) 273
BveI ACCTGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 138
CviAII CATG 1 cut(s) 219
CviJI RGCY 2 cut(s) 73, 133
CviKI_1 RGCY 2 cut(s) 73, 133
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 289
DpnI GATC 2 cut(s) 44, 165
DpnII GATC 2 cut(s) 42, 163
DraI TTTAAA 1 cut(s) 193
Eco105I TACGTA 1 cut(s) 273
Eco32I GATATC 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 10
Eco91I GGTNACC 1 cut(s) 283
EcoO65I GGTNACC 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 240
EcoRV GATATC 1 cut(s) 267
FaeI CATG 1 cut(s) 222
FaiI YATR 6 cut(s) 110, 136, 145, 206, 220, 276
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 218
Hin1II CATG 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 8, 235
HphI GGTGA 2 cut(s) 295, 334
Hpy188III TCNNGA 2 cut(s) 12, 245
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 4 cut(s) 140, 196, 272, 306
HpyCH4V TGCA 2 cut(s) 65, 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 289
HpySE526I ACGT 4 cut(s) 140, 196, 272, 306
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 2 cut(s) 42, 163
LpnPI CCDG 2 cut(s) 143, 305
LweI GCATC 1 cut(s) 238
MaeII ACGT 4 cut(s) 140, 196, 272, 306
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 44, 165
MboI GATC 2 cut(s) 42, 163
MluCI AATT 1 cut(s) 240
MlyI GAGTC 2 cut(s) 2, 244
MnlI CCTC 3 cut(s) 41, 122, 179
MseI TTAA 4 cut(s) 69, 153, 192, 213
MspCI CTTAAG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 2 cut(s) 42, 163
NlaIII CATG 1 cut(s) 222
NmuCI GTSAC 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 10
PleI GAGTC 2 cut(s) 2, 243
PpsI GAGTC 2 cut(s) 2, 243
Ppu21I YACGTR 2 cut(s) 273, 307
PspEI GGTNACC 1 cut(s) 283
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SaqAI TTAA 4 cut(s) 69, 153, 192, 213
Sau3AI GATC 2 cut(s) 42, 163
SchI GAGTC 2 cut(s) 2, 244
SetI ASST 9 cut(s) 33, 75, 143, 162, 199, 275, 290, 309, 324
SfaNI GCATC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 10
SmlI CTYRAG 2 cut(s) 10, 152
SmoI CTYRAG 2 cut(s) 10, 152
SnaBI TACGTA 1 cut(s) 273
Sse9I AATT 1 cut(s) 240
SspI AATATT 1 cut(s) 97
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 4 cut(s) 143, 199, 275, 309
TaqI TCGA 4 cut(s) 11, 50, 238, 246
TasI AATT 1 cut(s) 240
Tru1I TTAA 4 cut(s) 69, 153, 192, 213
Tru9I TTAA 4 cut(s) 69, 153, 192, 213
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
Vha464I CTTAAG 1 cut(s) 152
XapI RAATTY 1 cut(s) 240
XhoI CTCGAG 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.