RchiOBHm_Chr2g0112011

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000819
Physical Location & Seq
Reverse (-)
23770018 .. 23773090
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48554

Sequence Viewer

Length: 360 bp
ATGGATCAAGGGCTCAAGTGGACTGAAGATTGGTCCTTTGGTACTTGCTGGGAGTTGCACATCAAGGATTCCAGGTGGTATGGCGTTAAGCTTGTAAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACGTTATGCTTTCTTGAGCAGGTTGATCGCCTCATTGGCAAACATCATCTCTTTAAACGTAGTATCATACTGATTAAGGCATGGTGCTATTGTGAAAGGAGAGTGATACTAAGGGACCACAGTATGCAAACAACACTTCAAAACTTGAATCTGATCTCTCAAGTCAGTGGAGATCGCTCATTCACATGGAGGATATCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_assoc

Protein Analysis

119

Amino Acids

14.05

Weight (kDa)

8.84

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 64 - 97 5.6e-10 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 2 cut(s) 43, 157
AgsI TTSAA 3 cut(s) 136, 296, 304
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AlwI GGATC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 33, 271
AvaII GGWCC 2 cut(s) 33, 271
BanII GRGCYC 1 cut(s) 15
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 166
BglI GCCNNNNNGGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 2 cut(s) 33, 271
BmgT120I GGNCC 2 cut(s) 33, 271
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 73
BpuEI CTTGAG 2 cut(s) 191, 300
BseBI CCWGG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 4 cut(s) 4, 181, 309, 328
BspLI GGNNCC 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 1 cut(s) 12
BssMI GATC 4 cut(s) 4, 181, 309, 328
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 266
BstKTI GATC 4 cut(s) 7, 184, 312, 331
BstMBI GATC 4 cut(s) 4, 181, 309, 328
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 33, 271
Csp6I GTAC 2 cut(s) 42, 156
CviAII CATG 2 cut(s) 237, 342
CviJI RGCY 3 cut(s) 13, 91, 151
CviKI_1 RGCY 3 cut(s) 13, 91, 151
CviQI GTAC 2 cut(s) 42, 156
DdeI CTNAG 1 cut(s) 266
DpnI GATC 4 cut(s) 6, 183, 311, 330
DpnII GATC 4 cut(s) 4, 181, 309, 328
DraI TTTAAA 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 33, 271
Eco57I CTGAAG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 2 cut(s) 240, 345
FaiI YATR 8 cut(s) 81, 128, 154, 163, 224, 238, 281, 343
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 236, 341
FriOI GRGCYC 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 52
Hin1II CATG 2 cut(s) 240, 345
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 2 cut(s) 68, 304
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 2 cut(s) 158, 214
HpyCH4V TGCA 3 cut(s) 58, 109, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 2 cut(s) 158, 214
Hsp92II CATG 2 cut(s) 240, 345
Kzo9I GATC 4 cut(s) 4, 181, 309, 328
LpnPI CCDG 4 cut(s) 34, 58, 85, 161
MaeII ACGT 2 cut(s) 158, 214
MalI GATC 4 cut(s) 6, 183, 311, 330
MboI GATC 4 cut(s) 4, 181, 309, 328
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 15
MnlI CCTC 3 cut(s) 140, 197, 339
MseI TTAA 3 cut(s) 87, 210, 231
MslI CAYNNNNRTG 1 cut(s) 340
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 4 cut(s) 4, 181, 309, 328
NlaIII CATG 2 cut(s) 240, 345
NlaIV GGNNCC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 68, 304
Psp6I CCWGG 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 48
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 2 cut(s) 33, 271
RsaI GTAC 2 cut(s) 43, 157
RsaNI GTAC 2 cut(s) 42, 156
RseI CAYNNNNRTG 1 cut(s) 340
SaqAI TTAA 3 cut(s) 87, 210, 231
Sau3AI GATC 4 cut(s) 4, 181, 309, 328
Sau96I GGNCC 2 cut(s) 33, 271
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 15
SetI ASST 5 cut(s) 77, 93, 161, 180, 217
SinI GGWCC 2 cut(s) 33, 271
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 3 cut(s) 14, 170, 315
SmoI CTYRAG 3 cut(s) 14, 170, 315
SspI AATATT 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 2 cut(s) 161, 217
TfiI GAWTC 2 cut(s) 68, 304
Tru1I TTAA 3 cut(s) 87, 210, 231
Tru9I TTAA 3 cut(s) 87, 210, 231
TscAI CASTG 1 cut(s) 328
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 33, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.