Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000695.1

Orthogroup ID

OG0000819

Physical Location & Seq

Genomic Coordinates Forward (+)

3332 .. 4189

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000695.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgggcgatcttaggccttggtcacctgagccaaaaggcgccgttttggaggagaggccgacctcatcttcttcatccgtgttttcaatttcaacaaatcagagggacgtttccaccgagtactggcggagagcggaggaggcaatgcagggggttatagctcagatccaacgtactcacatctccgagcagagaaggaaagccgcctttgattacgttcagaggatcattggagcttgtattggtgttcccgtttggatcagtacctctgaagacgtatctgccggatggagtgttgttgttgaaagggaagatcacaatatggctgctgagtttatggtgaaggacgtgcagttaattcgagcaaaggtttgtaggttttacgtaccctatatcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

15.14

Weight (kDa)

6.12

Isoelectric Point (pI)

60.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64750 AT1G64750 AT1G64750 AT5G45010
fragaria_vesca	FvH4_5g05150 FvH4_6g50520
malus_domestica	MD06G1177000.v1.1 MD08G1129000.v1.1 MD09G1035600.v1.1 MD14G1183200.v1.1
prunus_persica	Prupe.3G282400_v2.0.a1 Prupe.3G282400_v2.0.a1 Prupe.5G175700_v2.0.a1
pyrus_communis	pycom06g15710 pycom11g08620 pycom14g15210
rosa_chinensis	RchiOBHm_Chr1g0343851 RchiOBHm_Chr2g0112011 RchiOBHm_Chr2g0170951 RchiOBHm_Chr5g0036811 RchiOBHm_Chr5g0042801 RchiOBHm_Chr5g0057591 RchiOBHm_Chr5g0071001 RchiOBHm_Chr7g0184521 RchiOBHm_Chr7g0193821
rosa_laevigata	RLG00000021995
rosa_multiflora	Rmu_sc0000695.1_g000001 Rmu_sc0001010.1_g000075 Rmu_sc0001214.1_g000046 Rmu_sc0001436.1_g000030 Rmu_sc0002806.1_g000028 Rmu_sc0003522.1_g000035 Rmu_sc0007678.1_g000015 Rmu_sc0010716.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080950 Rroxscaffold_3G00242680 Rroxscaffold_3G00261800 Rroxscaffold_4G00331170
rosa_rugosa	Rorug01G0046300 Rorug02G0552600 Rorug02G0552700 Rorug02G0564600 Rorug05G0208000 Rorug05G0208100 Rorug06G0106700 Rorug07G0012300
rosa_samantha	Rh1CG011100 Rh1CG085000 Rh2CG099600 Rh2DG172400 Rh2DG554400 Rh2DG647800 Rh4AG144500 Rh5AG374300 Rh5AG374400 Rh5AG422100 Rh7AG138900 Rh7AG342100 Rh7AG360400 Rh7CG320000
rosa_wichuraiana	Rw2G027910 Rw2G051800 Rw4G015770 Rw5G001030 Rw5G037950 Rw6G008270 Rw7G011840 Rw7G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	134
AciI	CCGC	3 cut(s)	127, 134, 204
AclWI	GGATC	3 cut(s)	160, 233, 266
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	4 cut(s)	122, 175, 265, 387
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	87, 93, 305
AjiI	CACGTC	1 cut(s)	349
AluBI	AGCT	2 cut(s)	161, 236
AluI	AGCT	2 cut(s)	161, 236
AlwI	GGATC	3 cut(s)	160, 233, 266
AoxI	GGCC	2 cut(s)	14, 56
ApeKI	GCWGC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	15, 352
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	204, 327
BlsI	GCNGC	2 cut(s)	205, 328
BmcAI	AGTACT	1 cut(s)	122
BmgBI	CACGTC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	74, 293
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	18, 176, 321
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	65, 152
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	16, 58
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	16, 58
Bsp143I	GATC	5 cut(s)	7, 165, 225, 258, 313
BspACI	CCGC	3 cut(s)	127, 134, 204
BspANI	GGCC	2 cut(s)	16, 58
BspCNI	CTCAG	3 cut(s)	19, 175, 322
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	3 cut(s)	160, 233, 266
BspT107I	GGYRCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	5 cut(s)	7, 165, 225, 258, 313
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	385
BstDEI	CTNAG	4 cut(s)	11, 27, 162, 330
BstEII	GGTNACC	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	74, 293
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	10, 168, 228, 261, 316
BstMBI	GATC	5 cut(s)	7, 165, 225, 258, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	21
BstSNI	TACGTA	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	16, 58
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	74, 293
CfoI	GCGC	1 cut(s)	41
Csp6I	GTAC	4 cut(s)	121, 174, 264, 386
CviJI	RGCY	7 cut(s)	16, 31, 58, 161, 203, 236, 326
CviKI_1	RGCY	7 cut(s)	16, 31, 58, 161, 203, 236, 326
CviQI	GTAC	4 cut(s)	121, 174, 264, 386
DdeI	CTNAG	4 cut(s)	11, 27, 162, 330
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	5 cut(s)	9, 167, 227, 260, 315
DpnII	GATC	5 cut(s)	7, 165, 225, 258, 313
EciI	GGCGGA	1 cut(s)	142
Eco105I	TACGTA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	17
Eco147I	AGGCCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	21
EcoO65I	GGTNACC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	17
FaiI	YATR	6 cut(s)	158, 323, 338, 393, 398, 400
FaqI	GGGAC	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	398
Fnu4HI	GCNGC	2 cut(s)	204, 327
FokI	GGATG	2 cut(s)	61, 300
Fsp4HI	GCNGC	2 cut(s)	204, 327
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	204, 327
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	16, 58
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	15, 352
Hpy188I	TCNGA	5 cut(s)	102, 165, 187, 222, 271
HpyAV	CCTTC	2 cut(s)	189, 337
HpyCH4IV	ACGT	6 cut(s)	108, 172, 216, 276, 348, 384
HpyCH4V	TGCA	2 cut(s)	148, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	4 cut(s)	11, 27, 162, 330
HpySE526I	ACGT	6 cut(s)	108, 172, 216, 276, 348, 384
Hsp92I	GRCGYC	1 cut(s)	39
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Kzo9I	GATC	5 cut(s)	7, 165, 225, 258, 313
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	4 cut(s)	39, 109, 134, 298
Lsp1109I	GCAGC	1 cut(s)	313
MaeII	ACGT	6 cut(s)	108, 172, 216, 276, 348, 384
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	5 cut(s)	9, 167, 227, 260, 315
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	5 cut(s)	7, 165, 225, 258, 313
MboII	GAAGA	4 cut(s)	60, 63, 284, 323
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	2 cut(s)	87, 357
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	8 cut(s)	43, 48, 73, 96, 130, 133, 216, 277
MseI	TTAA	1 cut(s)	356
MspI	CCGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	140
NarI	GGCGCC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	5 cut(s)	7, 165, 225, 258, 313
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	205, 328
PluTI	GGCGCC	1 cut(s)	42
Ppu21I	YACGTR	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	4 cut(s)	122, 175, 265, 387
RsaNI	GTAC	4 cut(s)	121, 174, 264, 386
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	204, 327
Sau3AI	GATC	5 cut(s)	7, 165, 225, 258, 313
ScaI	AGTACT	1 cut(s)	122
SfoI	GGCGCC	1 cut(s)	40
SnaBI	TACGTA	1 cut(s)	385
Sse9I	AATT	2 cut(s)	87, 357
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	3 cut(s)	127, 134, 204
SspDI	GGCGCC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	17
TaiI	ACGT	6 cut(s)	111, 175, 219, 279, 351, 387
TaqI	TCGA	1 cut(s)	361
TasI	AATT	2 cut(s)	87, 357
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	67
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.