Rh7AG342100

Peptidylprolyl isomerase domain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000819
Physical Location & Seq
Forward (+)
43222422 .. 43226480
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG342100.1

Sequence Viewer

Length: 309 bp
ATGGATCCTCCAGGTTCCTCCCGGCCACATCGCCTTCGCAAGAATGAGAAGAGTTATATGCACCGAGACGTGGTTGCTCATATTGCTGTGTCGGCTGCTGAATTTGTCATCACTGGAAGTGTTGATGGTTTTGTTCCAATGGAGAAGGATCAGAAGATAGCATCTGAAGACACCAAGGTGGATATGTTCGAGGACGGTGACGAGTTTGAAGAGCTCAACATCAATCTAGGGTTCACCAGGCAGCCCTCCTTTTCAGCTCTGATTAATGAAGAGCGGTTTGGGGGTAAAAGAGAAGTAAGATACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000413 GO:0003002 GO:0003006 GO:0003674 GO:0003682 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010082 GO:0010305 GO:0010338 GO:0010358 GO:0016018 GO:0016604 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031056 GO:0031060 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033218 GO:0036211 GO:0040008 GO:0042277 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048442 GO:0048443 GO:0048444 GO:0048447 GO:0048449 GO:0048453 GO:0048464 GO:0048466 GO:0048467 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1902494 GO:1905392 GO:1905393 GO:1990904 GO:2000026 GO:2000241 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase WD40

Protein Analysis

102

Amino Acids

11.62

Weight (kDa)

5.16

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 274
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 12, 156
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 209
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 2 cut(s) 10, 236
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 2 cut(s) 214, 257
AluI AGCT 2 cut(s) 214, 257
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 2 cut(s) 12, 156
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 95, 241
ApoI RAATTY 1 cut(s) 101
AseI ATTAAT 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 209, 226
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 82, 253
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 2 cut(s) 12, 238
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 227
BisI GCNGC 2 cut(s) 96, 242
BlsI GCNGC 2 cut(s) 97, 243
Bme1390I CCNGG 3 cut(s) 12, 22, 238
BmgBI CACGTC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 6, 16
BmrFI CCNGG 3 cut(s) 12, 22, 238
BmsI GCATC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 2 cut(s) 12, 238
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 82, 253
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 4, 148
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 6, 16
BspPI GGATC 2 cut(s) 12, 156
BspQI GCTCTTC 2 cut(s) 204, 264
BsrBI CCGCTC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 2 cut(s) 4, 148
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 12, 238
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 3 cut(s) 44, 204, 264
BstKTI GATC 2 cut(s) 7, 151
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 2 cut(s) 4, 148
BstMWI GCNNNNNNNGC 2 cut(s) 83, 92
BstNI CCWGG 2 cut(s) 12, 238
BstSCI CCNGG 3 cut(s) 10, 20, 236
BstV1I GCAGC 2 cut(s) 82, 253
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 14
BtrI CACGTC 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 111
CviJI RGCY 5 cut(s) 25, 95, 214, 244, 257
CviKI_1 RGCY 5 cut(s) 25, 95, 214, 244, 257
DpnI GATC 2 cut(s) 6, 150
DpnII GATC 2 cut(s) 4, 148
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 3 cut(s) 44, 204, 264
EarI CTCTTC 3 cut(s) 44, 204, 264
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 10, 236
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 60
FaiI YATR 4 cut(s) 57, 59, 81, 185
Fnu4HI GCNGC 2 cut(s) 96, 242
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 96, 242
FspBI CTAG 1 cut(s) 227
GluI GCNGC 2 cut(s) 96, 242
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 22
HpaII CCGG 1 cut(s) 22
HphI GGTGA 2 cut(s) 209, 226
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 153, 166, 261
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 2 cut(s) 44, 139
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 92
HpySE526I ACGT 1 cut(s) 69
Kzo9I GATC 2 cut(s) 4, 148
LguI GCTCTTC 2 cut(s) 204, 264
LpnPI CCDG 5 cut(s) 24, 35, 99, 223, 250
Lsp1109I GCAGC 2 cut(s) 82, 253
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 6, 150
MbiI CCGCTC 1 cut(s) 274
MboI GATC 2 cut(s) 4, 148
MboII GAAGA 5 cut(s) 61, 166, 179, 221, 281
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 101
MnlI CCTC 4 cut(s) 18, 28, 184, 256
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 3 cut(s) 12, 22, 238
MvaI CCWGG 2 cut(s) 12, 238
MwoI GCNNNNNNNGC 2 cut(s) 83, 92
NciI CCSGG 1 cut(s) 22
NdeII GATC 2 cut(s) 4, 148
NlaIV GGNNCC 2 cut(s) 6, 16
NmuCI GTSAC 1 cut(s) 197
OliI CACNNNNGTG 1 cut(s) 176
PciSI GCTCTTC 2 cut(s) 204, 264
PkrI GCNGC 2 cut(s) 97, 243
PshBI ATTAAT 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 10, 236
PspGI CCWGG 2 cut(s) 10, 236
PspN4I GGNNCC 2 cut(s) 6, 16
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 2 cut(s) 204, 264
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 96, 242
Sau3AI GATC 2 cut(s) 4, 148
ScrFI CCNGG 3 cut(s) 12, 22, 238
SduI GDGCHC 1 cut(s) 216
SetI ASST 6 cut(s) 16, 72, 180, 216, 259, 306
SfaNI GCATC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 1 cut(s) 101
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 227
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 3 cut(s) 10, 20, 236
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 101
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 95, 241
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 118
VspI ATTAAT 1 cut(s) 264
XapI RAATTY 1 cut(s) 101
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.