Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000872

Physical Location & Seq

Genomic Coordinates Reverse (-)

25608432 .. 25609405

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68325.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCTAGCGTTCGTGTTCAGAAACCGAAAACAAAGTTTGAGAAGTTCTGGATCGGCCCATTTATTGGTGACAGAAACGGGTACCTTTTCGAATCCAGGAGAACTAGAGAATTGGCTCAACGACATTAACACAAACTCCAGAGTAGTAGTTTCAGATGCTTTTGCTGTACCAACTCTTAAAGAAGCTGCCCTTGGGGACAAATTCCAGTTCGAGAGACTAGATTCTACCCCGGAAAAGCTAGTGTTTAACAGGACAGTCACAATGAAAGAAAGCTCAAGTAAACCTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 ko01100 map00970 map01100

Pfam Domains

Protein Families

tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

96

Amino Acids

10.66

Weight (kDa)

8.12

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25350 AT1G25350 AT1G68325 AT5G19720
fragaria_vesca	FvH4_4g27080 FvH4_4g27080
malus_domestica	MD13G1039800.v1.1 MD16G1040700.v1.1
prunus_persica	Prupe.1G313400_v2.0.a1
pyrus_communis	pycom13g03420 pycom16g03530
rosa_chinensis	RchiOBHm_Chr1g0324521 RchiOBHm_Chr1g0324551 RchiOBHm_Chr1g0324791 RchiOBHm_Chr1g0324801 RchiOBHm_Chr4g0434881 RchiOBHm_Chr6g0267171 RchiOBHm_Chr6g0267561 RchiOBHm_Chr6g0267571
rosa_laevigata	RLG00000006639 RLG00000014022 RLG00000014023 RLG00000030192 RLG00000030194
rosa_multiflora	Rmu_co8125244.1_g000001 Rmu_sc0002328.1_g000004 Rmu_sc0002938.1_g000002 Rmu_sc0003124.1_g000003 Rmu_sc0007217.1_g000007 Rmu_sc0017253.1_g000007 Rmu_ssc0000388.1_g000042
rosa_roxburghii	Rroxscaffold_159G00432900 Rroxscaffold_159G00433020 Rroxscaffold_4G00325230 Rroxscaffold_4G00325240 Rroxscaffold_4G00325420 Rroxscaffold_4G00325440 Rroxscaffold_5G00376090 Rroxscaffold_7G00201130
rosa_rugosa	Rorug01G0047600 Rorug01G0047700 Rorug04G0279900 Rorug06G0030000 Rorug06G0033700
rosa_samantha	Rh1AG063900 Rh1CG065400 Rh1DG068700 Rh1DG070500 Rh4AG335700 Rh4BG344200 Rh4CG358600 Rh4DG338200 Rh6AG151800 Rh6BG152300 Rh6BG156400 Rh6CG147900 Rh6CG148000 Rh6CG152100 Rh6CG152200 Rh6DG136500 Rh6DG141600
rosa_wichuraiana	Rw1G005360 Rw4G029290 Rw6G013110 Rw6G013340 Rw6G013490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	64
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	2 cut(s)	82, 168
AfiI	CCNNNNNNNGG	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	94, 283
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	3 cut(s)	185, 238, 273
AluI	AGCT	3 cut(s)	185, 238, 273
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	79
AsuII	TTCGAA	1 cut(s)	89
AsuNHI	GCTAGC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	96, 285
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	4 cut(s)	5, 104, 218, 239
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	3 cut(s)	96, 230, 285
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	3 cut(s)	96, 230, 285
BmsI	GCATC	1 cut(s)	145
BmtI	GCTAGC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	190, 228, 284
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	96, 285
BseDI	CCNNGG	3 cut(s)	190, 228, 284
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	82
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	58
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	3 cut(s)	190, 228, 284
BssMI	GATC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	96, 285
Bst4CI	ACNGT	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	96, 285
BstSCI	CCNGG	3 cut(s)	94, 228, 283
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	81, 167
CviJI	RGCY	5 cut(s)	56, 115, 185, 238, 273
CviKI_1	RGCY	5 cut(s)	56, 115, 185, 238, 273
CviQI	GTAC	2 cut(s)	81, 167
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	94, 283
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	4 cut(s)	5, 104, 218, 239
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	230
HinfI	GANTC	2 cut(s)	91, 221
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	20, 154
Hpy188III	TCNNGA	3 cut(s)	48, 138, 211
Hpy8I	GTNNAC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	256
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	8 cut(s)	33, 81, 108, 151, 218, 235, 243, 270
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	4 cut(s)	5, 104, 218, 239
MaeIII	GTNAC	2 cut(s)	67, 256
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MluCI	AATT	2 cut(s)	109, 200
MseI	TTAA	3 cut(s)	126, 177, 246
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	3 cut(s)	96, 230, 285
MvaI	CCWGG	2 cut(s)	96, 285
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	67, 256
NspV	TTCGAA	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	91, 221
PflMI	CCANNNNNTGG	1 cut(s)	64
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	94, 283
PspGI	CCWGG	2 cut(s)	94, 283
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	82, 168
RsaNI	GTAC	2 cut(s)	81, 167
SaqAI	TTAA	3 cut(s)	126, 177, 246
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	50
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	3 cut(s)	96, 230, 285
SetI	ASST	5 cut(s)	86, 187, 240, 275, 286
SfaNI	GCATC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	2 cut(s)	109, 200
SspMI	CTAG	4 cut(s)	5, 104, 218, 239
StyD4I	CCNGG	3 cut(s)	94, 228, 283
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	89, 210
TasI	AATT	2 cut(s)	109, 200
TfiI	GAWTC	2 cut(s)	91, 221
Tru1I	TTAA	3 cut(s)	126, 177, 246
Tru9I	TTAA	3 cut(s)	126, 177, 246
TseFI	GTSAC	2 cut(s)	67, 256
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	2 cut(s)	67, 256
TspDTI	ATGAA	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	200
XspI	CTAG	4 cut(s)	5, 104, 218, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.