Rorug04G0279900

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000872
Physical Location & Seq
Forward (+)
45267450 .. 45277116
9667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0279900.1

Sequence Viewer

Length: 741 bp
ATGGAAGGGGGAGCACACCCATCTAGTAAGACAGAATTCACAGAATGCTGGAAGACCACATGGCGAACGCCTTACATTATGCGCCTTGCGCTCTCTGTTGGCATTGGAGGCCTCTTTTTTGGATATGACACAGGTGTCATTTCTGGGGCGCTGCTATACATTCGTGAGGACTTTGATGAAGTTGACAAGAAAACTTGGTTGCAAGAAACCATTGTGAGTATGGCAGTTGCAGGCGCTATCATTGGCGCTGCAATTGGAGGATGGATGAACGATGCCCTCGGCTGCAAAAAATCAATATTAATAGCAGATGTGGTGTTCTTCGTGGGAGCAGTAGTTATGGGAGTGGCTCCTGTTCCTTGGGTGATCATCATTGGAAGAATCATAGTTGGTTTGGGAGTTGGAATGGCTTCCATGACCGTGCCCCTCTACATTTCAGAGACTTCTCCTCATAGAATTAGAGGAGCTCTTGTTAGTACAGACGGTCTTCTCATCACAGGAGGTCATAAGTTTTTGTCATACCTCATCAATCTGGTATTAGCCAACAAGGCTCCTGGAACATGGCATTGGATGCTTGGAGTCGCTGGTGTTCTAGCTCTCGTTCAGTTTATTTTGATGTTGTCACTCCCTGAGTCTCCTAAATTGCTCTATAGAGAGAACAAGGTAGATGAAGCTAGGGCTATCTTAGCGAAAATCTACCCTGTGGAAGAAGTTGATGATGAACTGAAGGCCTTGCATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

246

Amino Acids

26.67

Weight (kDa)

5.76

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 31 - 243 5.3e-56 Sugar (and other) transporter
MFS_1 PF07690 34 - 228 5.5e-19 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 475
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 547, 579
AluBI AGCT 3 cut(s) 464, 593, 671
AluI AGCT 3 cut(s) 464, 593, 671
Alw21I GWGCWC 2 cut(s) 16, 466
Alw26I GTCTC 2 cut(s) 431, 636
AoxI GGCC 2 cut(s) 109, 726
ApeKI GCWGC 3 cut(s) 151, 248, 282
ApoI RAATTY 1 cut(s) 35
AseI ATTAAT 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 406
AspLEI GCGC 5 cut(s) 84, 91, 151, 236, 248
AsuHPI GGTGA 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 423
BanII GRGCYC 1 cut(s) 466
BbsI GAAGAC 2 cut(s) 59, 476
Bbv12I GWGCWC 2 cut(s) 16, 466
BbvI GCAGC 3 cut(s) 138, 235, 269
BccI CCATC 2 cut(s) 28, 255
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 1 cut(s) 363
BcoDI GTCTC 2 cut(s) 431, 636
BfaI CTAG 3 cut(s) 24, 590, 672
BfmI CTRYAG 1 cut(s) 646
BfoI RGCGCY 3 cut(s) 152, 237, 249
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 3 cut(s) 152, 249, 283
BlsI GCNGC 3 cut(s) 153, 250, 284
Bme1390I CCNGG 1 cut(s) 552
BmiI GGNNCC 2 cut(s) 348, 549
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 262, 558
BpiI GAAGAC 2 cut(s) 59, 476
BsaJI CCNNGG 2 cut(s) 277, 356
BsaXI ACNNNNNCTCC 4 cut(s) 318, 348, 453, 483
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 277, 356
BseGI GGATG 3 cut(s) 266, 270, 573
BseMII CTCAG 1 cut(s) 618
BseRI GAGGAG 2 cut(s) 435, 474
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 3 cut(s) 138, 235, 269
BshFI GGCC 2 cut(s) 111, 728
BsiHKAI GWGCWC 2 cut(s) 16, 466
BsmAI GTCTC 2 cut(s) 431, 636
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 2 cut(s) 111, 728
Bsp1286I GDGCHC 3 cut(s) 16, 423, 466
Bsp143I GATC 1 cut(s) 363
BspANI GGCC 2 cut(s) 111, 728
BspCNI CTCAG 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 348, 549
BssECI CCNNGG 2 cut(s) 277, 356
BssMI GATC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 2 cut(s) 418, 482
BstAPI GCANNNNNTGC 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 627, 682
BstF5I GGATG 3 cut(s) 266, 270, 573
BstH2I RGCGCY 3 cut(s) 152, 237, 249
BstHHI GCGC 5 cut(s) 84, 91, 151, 236, 248
BstKTI GATC 1 cut(s) 366
BstMAI GTCTC 2 cut(s) 431, 636
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 5 cut(s) 88, 108, 545, 568, 683
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 646
BstSLI GKGCMC 1 cut(s) 423
BstV1I GCAGC 3 cut(s) 138, 235, 269
BstV2I GAAGAC 2 cut(s) 59, 476
BsuRI GGCC 2 cut(s) 111, 728
BtsCI GGATG 3 cut(s) 266, 270, 573
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 5 cut(s) 84, 91, 151, 236, 248
Csp6I GTAC 1 cut(s) 474
CviAII CATG 4 cut(s) 60, 412, 558, 734
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 2 cut(s) 627, 682
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 356
Eco147I AGGCCT 2 cut(s) 111, 728
Eco24I GRGCYC 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 4 cut(s) 63, 415, 561, 737
FatI CATG 4 cut(s) 59, 411, 557, 733
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 152, 249, 283
FokI GGATG 3 cut(s) 273, 277, 580
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 3 cut(s) 152, 249, 283
FspBI CTAG 3 cut(s) 24, 590, 672
GlaI GCGC 5 cut(s) 83, 90, 150, 235, 247
GluI GCNGC 3 cut(s) 152, 249, 283
HaeII RGCGCY 3 cut(s) 152, 237, 249
HaeIII GGCC 2 cut(s) 111, 728
HhaI GCGC 5 cut(s) 84, 91, 151, 236, 248
Hin1II CATG 4 cut(s) 63, 415, 561, 737
Hin6I GCGC 5 cut(s) 82, 89, 149, 234, 246
HinP1I GCGC 5 cut(s) 82, 89, 149, 234, 246
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 3 cut(s) 378, 576, 629
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 436
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 718
HpyCH4III ACNGT 2 cut(s) 418, 482
HpyCH4V TGCA 5 cut(s) 202, 230, 251, 285, 733
HpyF10VI GCNNNNNNNGC 5 cut(s) 88, 108, 545, 568, 683
HpyF3I CTNAG 2 cut(s) 627, 682
Hsp92II CATG 4 cut(s) 63, 415, 561, 737
HspAI GCGC 5 cut(s) 82, 89, 149, 234, 246
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 1 cut(s) 363
LmnI GCTCC 5 cut(s) 11, 326, 352, 461, 553
Lsp1109I GCAGC 3 cut(s) 138, 235, 269
LweI GCATC 2 cut(s) 262, 558
MaeI CTAG 3 cut(s) 24, 590, 672
MaeIII GTNAC 1 cut(s) 618
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 5 cut(s) 64, 310, 387, 476, 716
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 3 cut(s) 16, 423, 466
MluCI AATT 4 cut(s) 35, 252, 453, 638
MlyI GAGTC 2 cut(s) 585, 638
MmeI TCCRAC 1 cut(s) 379
MroXI GAANNNNTTC 1 cut(s) 406
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 5 cut(s) 88, 108, 545, 568, 683
NdeII GATC 1 cut(s) 363
NlaIII CATG 4 cut(s) 63, 415, 561, 737
NlaIV GGNNCC 2 cut(s) 348, 549
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 618
PceI AGGCCT 2 cut(s) 111, 728
PctI GAATGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 378
PfoI TCCNGGA 1 cut(s) 550
PkrI GCNGC 3 cut(s) 153, 250, 284
PleI GAGTC 2 cut(s) 584, 637
PpsI GAGTC 2 cut(s) 584, 637
PshBI ATTAAT 1 cut(s) 299
Psp124BI GAGCTC 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 348, 549
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 466
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 3 cut(s) 152, 249, 283
Sau3AI GATC 1 cut(s) 363
SchI GAGTC 2 cut(s) 585, 638
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 3 cut(s) 16, 423, 466
SetI ASST 7 cut(s) 136, 466, 502, 522, 595, 663, 673
SfaNI GCATC 2 cut(s) 262, 558
SfcI CTRYAG 1 cut(s) 646
SmiMI CAYNNNNRTG 1 cut(s) 416
Sse9I AATT 4 cut(s) 35, 252, 453, 638
SseBI AGGCCT 2 cut(s) 111, 728
SspI AATATT 1 cut(s) 297
SspMI CTAG 3 cut(s) 24, 590, 672
SstI GAGCTC 1 cut(s) 466
StuI AGGCCT 2 cut(s) 111, 728
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 418, 482
TasI AATT 4 cut(s) 35, 252, 453, 638
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 3 cut(s) 151, 248, 282
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 4 cut(s) 192, 281, 681, 732
VspI ATTAAT 1 cut(s) 299
XapI RAATTY 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 406
XspI CTAG 3 cut(s) 24, 590, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.