Rh6CG152200

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000872
Physical Location & Seq
Forward (+)
19814637 .. 19817776
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG152200.1

Sequence Viewer

Length: 648 bp
ATGATTCATCTGAGTCGCCTCGGGTACCACATCAGAGAAGAGCTCAATAAAACAGCTCCTCACACAATGGTTGTGCTTGATCTTGTAAAGGTCGTCATTACCAACCGGAAAGATGACCTCATAAAGGACTGTGAAGCAAGAAAGTGGCCCGACTCTGAGGCGGAGTCCTACAAGGTTCCATTTTCCAAGGTGTTGTACATTGAGCGCTCCAATTTTCGCCTAAAGACTCAAAATACTACTTCGGACTTGCTCCTGGAGAATCTGCCCTGCTCAGACACGCATGTCCTATCAAGTGTGTGGATGCAAAGGATGTTTGTTTTAGCTGAGGATAATGAGACTGTCCTTGAGATACAGGTCGAATATGATCAGGAGAAGAAGACAAAGCAAAAGATAGGGGCACTTCGCATCCAGAGACATGAGTACATAGGCTATTTGACTCCTGAGAAGCTTGTGTTTAATACGGTCACACTGCGAGATAGCTACAAGAATGGGAAGTACGTAGGTCATCTTTGGAATCGTCAAAATAGAGAGGAATGTGGGAAGACTGCAGTGGATAGGGAATTCGGCTTTGTCTCAATTCTGGACCTTCTTTGGTTCCACATCTACACGTTTTCTGCTAGAAAGGGTGTCCCTGTACAGTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

215

Amino Acids

25.28

Weight (kDa)

8.64

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c_C PF03950 19 - 76 1.3e-08 tRNA synthetases class I (E and Q), anti-codon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 24
AciI CCGC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 560
AfaI GTAC 5 cut(s) 26, 197, 422, 497, 636
AfeI AGCGCT 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 1 cut(s) 643
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 5 cut(s) 43, 56, 323, 448, 480
AluI AGCT 5 cut(s) 43, 56, 323, 448, 480
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 3 cut(s) 329, 406, 577
Ama87I CYCGRG 1 cut(s) 20
Aor51HI AGCGCT 1 cut(s) 206
AoxI GGCC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 560
Asp718I GGTACC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 147, 583
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 1 cut(s) 583
BaeGI GKGCMC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 45
BbsI GAAGAC 2 cut(s) 383, 548
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 324
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 329, 406, 577
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 583
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 147, 583
BmiI GGNNCC 3 cut(s) 26, 177, 596
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 2 cut(s) 291, 414
BpiI GAAGAC 2 cut(s) 383, 548
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 499
BsaJI CCNNGG 2 cut(s) 19, 186
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 19, 186
BseGI GGATG 3 cut(s) 306, 315, 405
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 4 cut(s) 147, 285, 315, 432
BseRI GAGGAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 400
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 3 cut(s) 329, 406, 577
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 45, 400
Bsp1407I TGTACA 2 cut(s) 195, 634
Bsp143I GATC 2 cut(s) 79, 364
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 4 cut(s) 148, 284, 316, 433
BspLI GGNNCC 3 cut(s) 26, 177, 596
BspMAI CTGCAG 1 cut(s) 550
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 24
BsrGI TGTACA 2 cut(s) 195, 634
BssECI CCNNGG 2 cut(s) 19, 186
BssMI GATC 2 cut(s) 79, 364
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 4 cut(s) 131, 340, 463, 639
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 2 cut(s) 195, 634
BstBAI YACGTR 1 cut(s) 499
BstDEI CTNAG 5 cut(s) 11, 156, 271, 324, 441
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 3 cut(s) 306, 315, 405
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 2 cut(s) 82, 367
BstMAI GTCTC 3 cut(s) 329, 406, 577
BstMBI GATC 2 cut(s) 79, 364
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 400
BstSNI TACGTA 1 cut(s) 499
BstV2I GAAGAC 2 cut(s) 383, 548
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 306, 315, 405
BtsI GCAGTG 2 cut(s) 467, 555
BtsIMutI CAGTG 2 cut(s) 467, 555
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 147, 583
Csp6I GTAC 5 cut(s) 25, 196, 421, 496, 635
CviAII CATG 2 cut(s) 281, 416
CviJI RGCY 8 cut(s) 43, 56, 148, 323, 429, 448, 480, 567
CviKI_1 RGCY 8 cut(s) 43, 56, 148, 323, 429, 448, 480, 567
CviQI GTAC 5 cut(s) 25, 196, 421, 496, 635
DdeI CTNAG 5 cut(s) 11, 156, 271, 324, 441
DpnI GATC 2 cut(s) 81, 366
DpnII GATC 2 cut(s) 79, 364
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 43
Eco105I TACGTA 1 cut(s) 499
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 583
Eco47III AGCGCT 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 284, 419
FaiI YATR 5 cut(s) 122, 282, 363, 417, 425
FaqI GGGAC 1 cut(s) 614
FatI CATG 2 cut(s) 280, 415
FbaI TGATCA 1 cut(s) 364
FokI GGATG 3 cut(s) 313, 322, 392
FriOI GRGCYC 1 cut(s) 45
FspBI CTAG 1 cut(s) 618
GlaI GCGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 148
HapII CCGG 1 cut(s) 106
HhaI GCGC 1 cut(s) 207
Hin1II CATG 2 cut(s) 284, 419
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 8 cut(s) 4, 13, 152, 164, 226, 259, 436, 514
HpaII CCGG 1 cut(s) 106
Hpy188I TCNGA 5 cut(s) 12, 35, 157, 244, 274
Hpy188III TCNNGA 4 cut(s) 368, 409, 440, 581
HpyAV CCTTC 1 cut(s) 596
HpyCH4III ACNGT 4 cut(s) 131, 340, 463, 639
HpyCH4IV ACGT 2 cut(s) 498, 608
HpyCH4V TGCA 2 cut(s) 304, 548
HpyF3I CTNAG 5 cut(s) 11, 156, 271, 324, 441
HpySE526I ACGT 2 cut(s) 498, 608
Hsp92II CATG 2 cut(s) 284, 419
HspAI GCGC 1 cut(s) 205
KpnI GGTACC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 2 cut(s) 79, 364
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 3 cut(s) 61, 212, 255
LpnPI CCDG 9 cut(s) 119, 239, 266, 280, 338, 353, 422, 453, 566
LweI GCATC 2 cut(s) 291, 414
MaeI CTAG 1 cut(s) 618
MaeII ACGT 2 cut(s) 498, 608
MaeIII GTNAC 1 cut(s) 463
MalI GATC 2 cut(s) 81, 366
MboI GATC 2 cut(s) 79, 364
MboII GAAGA 4 cut(s) 50, 385, 388, 553
MhlI GDGCHC 2 cut(s) 45, 400
MluCI AATT 3 cut(s) 211, 560, 576
MlyI GAGTC 5 cut(s) 22, 146, 173, 220, 430
MnlI CCTC 6 cut(s) 29, 69, 128, 151, 319, 523
MseI TTAA 1 cut(s) 456
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
NdeII GATC 2 cut(s) 79, 364
NlaIII CATG 2 cut(s) 284, 419
NlaIV GGNNCC 3 cut(s) 26, 177, 596
NmuCI GTSAC 1 cut(s) 463
NspI RCATGY 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 33
PfeI GAWTC 3 cut(s) 4, 259, 514
PfoI TCCNGGA 1 cut(s) 252
PleI GAGTC 5 cut(s) 21, 146, 172, 220, 430
PpsI GAGTC 5 cut(s) 21, 146, 172, 220, 430
Ppu21I YACGTR 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 26, 177, 596
PspPI GGNCC 2 cut(s) 147, 583
PstI CTGCAG 1 cut(s) 550
RsaI GTAC 5 cut(s) 26, 197, 422, 497, 636
RsaNI GTAC 5 cut(s) 25, 196, 421, 496, 635
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 456
Sau3AI GATC 2 cut(s) 79, 364
Sau96I GGNCC 2 cut(s) 147, 583
SchI GAGTC 5 cut(s) 22, 146, 173, 220, 430
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 2 cut(s) 45, 400
SfaNI GCATC 2 cut(s) 291, 414
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SnaBI TACGTA 1 cut(s) 499
Sse9I AATT 3 cut(s) 211, 560, 576
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 618
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 4 cut(s) 131, 340, 463, 639
TaiI ACGT 2 cut(s) 501, 611
TaqI TCGA 1 cut(s) 357
TasI AATT 3 cut(s) 211, 560, 576
TatI WGTACW 3 cut(s) 195, 420, 634
TfiI GAWTC 3 cut(s) 4, 259, 514
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 2 cut(s) 474, 555
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspRI CASTG 2 cut(s) 474, 555
VpaK11BI GGWCC 1 cut(s) 583
XagI CCTNNNNNAGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 560
XceI RCATGY 1 cut(s) 284
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.