RLG00000030192

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
57344594 .. 57345470
877 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030192

Sequence Viewer

Length: 531 bp
ATGCTCATTGCATTGTGGATTCTCTTAAGAATATCACCCATGCTGTGCACTTTAGAATTTGAGACACGGCGTGCTTCATACTATTGGTTAGTGCATTCTCTAGGCCTATATCAACCACATGTTTGGGAATATTCAAGACTGAATGTTAGTAACACTGTTATGTCAAAGCCCGAGGATAATGAGACTGTCCTTGAGATACGGGTCGAGTATGATCCTGTCCGATTGTTTGACAGACTATTCAACTTAGAGAATCTTGATGACTGGCTTTTTGATCTGAATGGAAAATCGAAAGTGGTAATACTAAATGCATTTGATGTTTCCCCACTTGAGAAAGGTGTTGGTGTTGGTGACAAGTTTCAGTTCGAAAGACTTGGCTATTTTGTGGTCGACAAAGATTCCACTCTTGAGAAGCTTATGTTTAATCGTACGGTCACACTGCGAGATAGCTACAAGCGTGGGAAGTACGCCATCTTTGGAATCATCAGAATAGAGAGGAATGTGAGAAGTAGTTTAATTTATAGCAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

177

Amino Acids

20.77

Weight (kDa)

6.75

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c PF00749 8 - 64 2.3e-11 tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C2 PF20974 73 - 130 2.1e-09 tRNA synthetases class I (E and Q), anti-codon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 387
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 56
AdeI CACNNNGTG 1 cut(s) 71
AfaI GTAC 2 cut(s) 427, 464
AflII CTTAAG 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 2 cut(s) 135, 241
AluBI AGCT 2 cut(s) 412, 447
AluI AGCT 2 cut(s) 412, 447
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 56, 176
Alw44I GTGCAC 1 cut(s) 46
AlwI GGATC 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 1 cut(s) 103
ApaLI GTGCAC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsuHPI GGTGA 2 cut(s) 27, 359
AsuII TTCGAA 1 cut(s) 363
AvaI CYCGRG 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 1 cut(s) 476
BceAI ACGGC 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 56, 176
BfaI CTAG 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 363
BpuEI CTTGAG 3 cut(s) 212, 347, 425
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 50
BshFI GGCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 170
BsiWI CGTACG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 56, 176
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 211, 271
BspANI GGCC 1 cut(s) 105
BspPI GGATC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 363
BspTI CTTAAG 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 211, 271
Bst4CI ACNGT 3 cut(s) 157, 187, 430
BstAFI CTTAAG 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 244
BstKTI GATC 2 cut(s) 214, 274
BstMAI GTCTC 2 cut(s) 56, 176
BstMBI GATC 2 cut(s) 211, 271
BstNSI RCATGY 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 2 cut(s) 153, 434
Cac8I GCNNGC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 426, 463
CviAII CATG 2 cut(s) 40, 119
CviJI RGCY 6 cut(s) 105, 169, 265, 375, 412, 447
CviKI_1 RGCY 6 cut(s) 105, 169, 265, 375, 412, 447
CviQI GTAC 2 cut(s) 426, 463
DdeI CTNAG 1 cut(s) 244
DpnI GATC 2 cut(s) 213, 273
DpnII GATC 2 cut(s) 211, 271
DraIII CACNNNGTG 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 310
FaeI CATG 2 cut(s) 43, 122
FaiI YATR 8 cut(s) 41, 79, 109, 120, 161, 210, 416, 519
FatI CATG 2 cut(s) 39, 118
FblI GTMKAC 1 cut(s) 387
FspBI CTAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 105
Hin1II CATG 2 cut(s) 43, 122
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 4 cut(s) 19, 250, 395, 477
HphI GGTGA 2 cut(s) 27, 359
Hpy166II GTNNAC 2 cut(s) 48, 388
Hpy188I TCNGA 3 cut(s) 221, 276, 485
Hpy188III TCNNGA 3 cut(s) 135, 254, 404
Hpy8I GTNNAC 2 cut(s) 48, 388
HpyCH4III ACNGT 3 cut(s) 157, 187, 430
HpyCH4V TGCA 4 cut(s) 11, 48, 94, 308
HpyF3I CTNAG 1 cut(s) 244
Hsp92II CATG 2 cut(s) 43, 122
Kzo9I GATC 2 cut(s) 211, 271
LpnPI CCDG 2 cut(s) 228, 247
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 3 cut(s) 149, 347, 430
MalI GATC 2 cut(s) 213, 273
MboI GATC 2 cut(s) 211, 271
MfeI CAATTG 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 3 cut(s) 56, 513, 526
MnlI CCTC 2 cut(s) 166, 486
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 3 cut(s) 26, 420, 512
MslI CAYNNNNRTG 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 25
MunI CAATTG 1 cut(s) 526
Mva1269I GAATGC 1 cut(s) 94
NdeII GATC 2 cut(s) 211, 271
NlaIII CATG 2 cut(s) 43, 122
NmuCI GTSAC 2 cut(s) 347, 430
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 1 cut(s) 363
PceI AGGCCT 1 cut(s) 105
PciI ACATGT 1 cut(s) 118
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 4 cut(s) 19, 250, 395, 477
Pfl23II CGTACG 1 cut(s) 425
PscI ACATGT 1 cut(s) 118
PspLI CGTACG 1 cut(s) 425
RsaI GTAC 2 cut(s) 427, 464
RsaNI GTAC 2 cut(s) 426, 463
RseI CAYNNNNRTG 1 cut(s) 158
SalI GTCGAC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 26, 420, 512
Sau3AI GATC 2 cut(s) 211, 271
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 337, 414, 449
SfuI TTCGAA 1 cut(s) 363
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 4 cut(s) 25, 191, 326, 404
SmoI CTYRAG 4 cut(s) 25, 191, 326, 404
Sse9I AATT 3 cut(s) 56, 513, 526
SseBI AGGCCT 1 cut(s) 105
SspI AATATT 1 cut(s) 131
SspMI CTAG 1 cut(s) 101
StuI AGGCCT 1 cut(s) 105
TaaI ACNGT 3 cut(s) 157, 187, 430
TaqI TCGA 4 cut(s) 204, 287, 363, 387
TasI AATT 3 cut(s) 56, 513, 526
TfiI GAWTC 4 cut(s) 19, 250, 395, 477
Tru1I TTAA 3 cut(s) 26, 420, 512
Tru9I TTAA 3 cut(s) 26, 420, 512
TscAI CASTG 2 cut(s) 160, 441
TseFI GTSAC 2 cut(s) 347, 430
Tsp45I GTSAC 2 cut(s) 347, 430
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 2 cut(s) 160, 441
Vha464I CTTAAG 1 cut(s) 25
VneI GTGCAC 1 cut(s) 46
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.