RLG00000014022

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000872
Physical Location & Seq
Forward (+)
45867984 .. 45869852
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014022

Sequence Viewer

Length: 726 bp
ATGCCGGCCAAGGAGAAGAGCCTTGAGCTCTTCTTGAAGGTCGGACTGGATGAGCGGACGGCCAAAAACACAATCGCTAACCAGAAGGTCACCGCCAATCTAAGCGCGGTCATTCACGAGGCTGCAGTTACTGATGGATGCAGTCGGAGCGTCGGTAATCTTCTCTACACGTTTCCAGCAAATGCCCTTGTGCATCACCCTGTGTTAACACAGTACATTGTGTCTTCAAAGATTAAAATCCCAGCTCAGTTAGATGCGGCTTTGTCATTTTTTGCAAACACGGGGCCAGAAAACTTCAAAACAAGTGAATTTGAAGAAGCATGTGGTGTTGGTGTTGAAGTTTCAGAAGAAGAAATCAAGCAATCTGTTAATGAGGTTTTTGAAGAGAATAAGTCTGCAATTTTGGAACAGCGCTATAAAACAAATGTGGGTGACTTATTTGCACATCTTAGGAAGAGACATCCGTGGGCTGACCCAAAAATTGTCAAGGCATCCATTGATACAAAGTTGCATGAATATCTTGGTGAAAGGACTGCAGCAGATGATGAAAAGGTTCCTAAAAAGAAGAAAGAGAAACCTGCTAAGGAAAAAGCTATTGCTGTTTCTACCCCTGAACAACCAGCTGAAGAAATTCTTAATCCATATGCGATATTCCCTCAACCAGAGGAAAACTTTAAGGTTCATACTTCTGTTTTCTTTAGTGATGGTTCTATTCTGAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

242

Amino Acids

26.76

Weight (kDa)

6.02

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_synt_1c_R1 PF04558 6 - 159 1.9e-50 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
tRNA_synt_1c_R2 PF04557 162 - 235 1.5e-06 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
AccBSI CCGCTC 1 cut(s) 55
AccII CGCG 1 cut(s) 107
AciI CCGC 4 cut(s) 55, 93, 107, 257
AcoI YGGCCR 2 cut(s) 6, 60
AcsI RAATTY 2 cut(s) 308, 630
AcuI CTGAAG 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 215
AfeI AGCGCT 1 cut(s) 413
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 6 cut(s) 37, 228, 298, 314, 338, 383
AluBI AGCT 4 cut(s) 28, 245, 593, 623
AluI AGCT 4 cut(s) 28, 245, 593, 623
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 451
AlwNI CAGNNNCTG 1 cut(s) 131
Aor51HI AGCGCT 1 cut(s) 413
AoxI GGCC 3 cut(s) 6, 60, 284
ApeKI GCWGC 2 cut(s) 122, 536
ApoI RAATTY 2 cut(s) 308, 630
Asp700I GAANNNNTTC 2 cut(s) 552, 630
AspLEI GCGC 2 cut(s) 107, 414
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 4 cut(s) 82, 188, 443, 536
BanII GRGCYC 1 cut(s) 30
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 109, 548
BccI CCATC 2 cut(s) 128, 698
BceAI ACGGC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 451
BfmI CTRYAG 2 cut(s) 123, 534
BfoI RGCGCY 1 cut(s) 415
BfuAI ACCTGC 1 cut(s) 586
BisI GCNGC 3 cut(s) 123, 258, 537
BlsI GCNGC 3 cut(s) 124, 259, 538
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 285, 555
BmsI GCATC 4 cut(s) 128, 202, 244, 500
BpiI GAAGAC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 9, 464
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 51
Bse8I GATNNNNATC 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 9, 464
BseGI GGATG 4 cut(s) 55, 143, 460, 491
BseJI GATNNNNATC 1 cut(s) 236
BseMII CTCAG 2 cut(s) 260, 707
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 109, 548
BseYI CCCAGC 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 3 cut(s) 8, 62, 286
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 451
BsnI GGCC 3 cut(s) 8, 62, 286
Bsp1286I GDGCHC 1 cut(s) 30
BspACI CCGC 4 cut(s) 55, 93, 107, 257
BspANI GGCC 3 cut(s) 8, 62, 286
BspCNI CTCAG 2 cut(s) 259, 708
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 285, 555
BspMAI CTGCAG 2 cut(s) 127, 538
BspMI ACCTGC 1 cut(s) 586
BspQI GCTCTTC 2 cut(s) 11, 35
BsrBI CCGCTC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 9, 464
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 4 cut(s) 11, 35, 378, 449
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 101, 246, 449, 582, 716
BstDSI CCRYGG 1 cut(s) 464
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 4 cut(s) 55, 143, 460, 491
BstFNI CGCG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 2 cut(s) 107, 414
BstMAI GTCTC 1 cut(s) 451
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 324
BstPI GGTNACC 1 cut(s) 88
BstSFI CTRYAG 2 cut(s) 123, 534
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 109, 548
BstV2I GAAGAC 1 cut(s) 216
BsuRI GGCC 3 cut(s) 8, 62, 286
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 4 cut(s) 55, 143, 460, 491
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 131
CfoI GCGC 2 cut(s) 107, 414
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 321, 512
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 5 cut(s) 101, 246, 449, 582, 716
DraIII CACNNNGTG 1 cut(s) 202
EaeI YGGCCR 2 cut(s) 6, 60
Eam1104I CTCTTC 4 cut(s) 11, 35, 378, 449
EarI CTCTTC 4 cut(s) 11, 35, 378, 449
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 413
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 645
Eco91I GGTNACC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 324, 515
FaiI YATR 6 cut(s) 322, 417, 513, 643, 645, 684
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FatI CATG 2 cut(s) 320, 511
FauNDI CATATG 1 cut(s) 643
Fnu4HI GCNGC 3 cut(s) 123, 258, 537
FokI GGATG 4 cut(s) 62, 150, 447, 478
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 3 cut(s) 123, 258, 537
GlaI GCGC 2 cut(s) 106, 413
GluI GCNGC 3 cut(s) 123, 258, 537
GsaI CCCAGC 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 3 cut(s) 8, 62, 286
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 139
HhaI GCGC 2 cut(s) 107, 414
Hin1II CATG 2 cut(s) 324, 515
Hin6I GCGC 2 cut(s) 105, 412
HinP1I GCGC 2 cut(s) 105, 412
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HpaI GTTAAC 1 cut(s) 207
HpaII CCGG 1 cut(s) 5
HphI GGTGA 4 cut(s) 82, 188, 443, 536
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 4 cut(s) 44, 147, 346, 717
Hpy188III TCNNGA 2 cut(s) 34, 116
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 31, 79
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 8 cut(s) 125, 141, 193, 275, 398, 443, 511, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 5 cut(s) 101, 246, 449, 582, 716
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 2 cut(s) 324, 515
HspAI GCGC 2 cut(s) 105, 412
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
KspAI GTTAAC 1 cut(s) 207
LguI GCTCTTC 2 cut(s) 11, 35
LmnI GCTCC 1 cut(s) 147
Lsp1109I GCAGC 2 cut(s) 109, 548
LweI GCATC 4 cut(s) 128, 202, 244, 500
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 3 cut(s) 88, 127, 431
MbiI CCGCTC 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 308, 399, 480, 630
MmeI TCCRAC 2 cut(s) 22, 125
MnlI CCTC 4 cut(s) 112, 367, 658, 666
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 2 cut(s) 552, 630
MseI TTAA 5 cut(s) 206, 234, 369, 636, 675
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 1 cut(s) 5
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 147
NaeI GCCGGC 1 cut(s) 6
NdeI CATATG 1 cut(s) 643
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 324, 515
NlaIV GGNNCC 2 cut(s) 285, 555
NmuCI GTSAC 2 cut(s) 88, 431
NspI RCATGY 1 cut(s) 324
PciSI GCTCTTC 2 cut(s) 11, 35
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 2 cut(s) 552, 630
PkrI GCNGC 3 cut(s) 124, 259, 538
Psp124BI GAGCTC 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 285, 555
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 2 cut(s) 127, 538
PstNI CAGNNNCTG 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SacI GAGCTC 1 cut(s) 30
SapI GCTCTTC 2 cut(s) 11, 35
SaqAI TTAA 5 cut(s) 206, 234, 369, 636, 675
SatI GCNGC 3 cut(s) 123, 258, 537
Sau96I GGNCC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 4 cut(s) 128, 202, 244, 500
SfcI CTRYAG 2 cut(s) 123, 534
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 4 cut(s) 308, 399, 480, 630
SsiI CCGC 4 cut(s) 55, 93, 107, 257
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 173
TasI AATT 4 cut(s) 308, 399, 480, 630
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 260
Tru1I TTAA 5 cut(s) 206, 234, 369, 636, 675
Tru9I TTAA 5 cut(s) 206, 234, 369, 636, 675
TseFI GTSAC 2 cut(s) 88, 431
TseI GCWGC 2 cut(s) 122, 536
Tsp45I GTSAC 2 cut(s) 88, 431
TspDTI ATGAA 3 cut(s) 528, 561, 671
TspGWI ACGGA 1 cut(s) 453
XapI RAATTY 2 cut(s) 308, 630
XceI RCATGY 1 cut(s) 324
XmnI GAANNNNTTC 2 cut(s) 552, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.