Rmu_ssc0000388.1_g000042

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000388.1
OG0000872
Physical Location & Seq
Reverse (-)
199901 .. 206226
6326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000388.1_g000042.1.cds

Sequence Viewer

Length: 1299 bp
atgcctgccaaggacgacagcgcctccgacaaggagaagagccttgagctcttcctgaaggtcggactggatgagcggacggccaaaaacacaatcgctaaccagaaggtcaccgccaatctaagcgcggctgcagttactgatggatgcagtcggagcgtcggtaatcttctctacacggttgctacaaagtttccagcaaatgcccttgtgcatcgccccgtgttaacacactacattgtgtcttcaaagattaaaatcccagctcagttagatgaggctctgtcattttttgcaaacacggggccagaaaacttcaaaacaagtgaatttgaacgagcatgtggtgttggtgttcaagtttcagaagaagaaatcaagcaatctgttaatggggtttttgaagagaataagtctgcaattttggaacagcgctataaaaaaaatgtgggtgacttatttgcacatcttaggaagagacatccgtgggctgaccccaaaattgtcaaggcatccattgatacaaagttgcatgaattccttggtgaaaggactgcagcagatgatgaaaaggttcctaaaaagaagaaagagaaacctgctaaagtagaggaaaaagctattgctgtttctacccctgaacaaccagctgaagaaactcttaatccatatgcgatattccctcaaccagaggaaaactttaagacgggggatgagataaaggagtacagggagaaaaaaatgaacagcccttggagggacaggccaattaaagagtcgcagaaactttttgaggatataaggcgaggcctgattgaagaagcgaaggcaactctaagaatgaaacaagacatgcagagcgataattttaacatgtatgaccttattgcatatcgtatcaagtttagtttctacctcaaatgttcttttcggttacccaggcttatggcttctttcaaggagctgggtactgcgccgccaccatccatggatggtggcatggtgacgccacaaggtggcataatggcgtcacaggctgtgggttccgctagagagcgtaggagacccataggttcaacggattctagctctaggaactggaagagagcaagtttggcacaacctgatccattgatcattgatactcaaaatccgtctcatgagaatattttggattgtggttatgtccaagagacatcattgggggacgcctcaatgttagaaccaatttctgataatataaagatctctaaaaactacactagtgtacatgaggacgtgagattattgagccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

432

Amino Acids

48.43

Weight (kDa)

8.12

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 607
AccB7I CCANNNNNTGG 1 cut(s) 1016
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 1 cut(s) 128
AciI CCGC 5 cut(s) 76, 114, 128, 977, 1047
AclWI GGATC 1 cut(s) 1121
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 2 cut(s) 329, 536
AcuI CTGAAG 2 cut(s) 77, 672
AcyI GRCGYC 3 cut(s) 1007, 1028, 1209
AdeI CACNNNGTG 1 cut(s) 1016
AfaI GTAC 3 cut(s) 728, 970, 1269
AfeI AGCGCT 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 757, 1016
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 8 cut(s) 249, 319, 335, 359, 404, 818, 958, 1077
AhlI ACTAGT 1 cut(s) 1262
AjiI CACGTC 1 cut(s) 1279
AjnI CCWGG 1 cut(s) 938
AluBI AGCT 6 cut(s) 49, 266, 620, 650, 964, 1089
AluI AGCT 6 cut(s) 49, 266, 620, 650, 964, 1089
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 4 cut(s) 472, 1057, 1161, 1187
AlwI GGATC 1 cut(s) 1121
AlwNI CAGNNNCTG 1 cut(s) 140
Aor51HI AGCGCT 1 cut(s) 434
AoxI GGCC 4 cut(s) 81, 305, 764, 808
ApeKI GCWGC 2 cut(s) 131, 557
ApoI RAATTY 2 cut(s) 329, 536
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 4 cut(s) 23, 128, 435, 976
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 4 cut(s) 103, 464, 557, 1015
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 118, 569
BccI CCATC 3 cut(s) 137, 986, 991
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 940
BclI TGATCA 1 cut(s) 1134
BcoDI GTCTC 4 cut(s) 472, 1057, 1161, 1187
BcuI ACTAGT 1 cut(s) 1262
BfaI CTAG 4 cut(s) 1050, 1086, 1092, 1263
BfmI CTRYAG 2 cut(s) 132, 555
BfoI RGCGCY 2 cut(s) 24, 436
BfuAI ACCTGC 1 cut(s) 607
BglII AGATCT 1 cut(s) 1245
BisI GCNGC 4 cut(s) 129, 132, 558, 977
BlsI GCNGC 4 cut(s) 130, 133, 559, 978
Bme1390I CCNGG 1 cut(s) 940
BmgBI CACGTC 1 cut(s) 1279
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 3 cut(s) 306, 576, 1045
BmrFI CCNGG 1 cut(s) 940
BmsI GCATC 3 cut(s) 137, 223, 521
BpiI GAAGAC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 257
BsaHI GRCGYC 3 cut(s) 1007, 1028, 1209
BsaI GGTCTC 1 cut(s) 1057
BsaJI CCNNGG 6 cut(s) 9, 485, 541, 752, 938, 987
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 148, 178
Bsc4I CCNNNNNNNGG 2 cut(s) 757, 1016
Bse1I ACTGG 2 cut(s) 72, 1103
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 1 cut(s) 940
BseDI CCNNGG 6 cut(s) 9, 485, 541, 752, 938, 987
BseGI GGATG 7 cut(s) 76, 152, 481, 512, 718, 983, 997
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 757, 1016
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 2 cut(s) 72, 1103
BseXI GCAGC 2 cut(s) 118, 569
BseYI CCCAGC 2 cut(s) 262, 964
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 4 cut(s) 83, 307, 766, 810
BsiHKAI GWGCWC 1 cut(s) 51
BslFI GGGAC 2 cut(s) 773, 1220
BslI CCNNNNNNNGG 2 cut(s) 757, 1016
BsmAI GTCTC 4 cut(s) 472, 1057, 1161, 1187
BsmBI CGTCTC 1 cut(s) 1161
BsmFI GGGAC 2 cut(s) 773, 1220
BsnI GGCC 4 cut(s) 83, 307, 766, 810
Bso31I GGTCTC 1 cut(s) 1057
Bsp1286I GDGCHC 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 1267
Bsp143I GATC 3 cut(s) 1126, 1134, 1245
Bsp19I CCATGG 1 cut(s) 987
BspACI CCGC 5 cut(s) 76, 114, 128, 977, 1047
BspANI GGCC 4 cut(s) 83, 307, 766, 810
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 128
BspHI TCATGA 1 cut(s) 1159
BspLI GGNNCC 3 cut(s) 306, 576, 1045
BspMAI CTGCAG 2 cut(s) 136, 559
BspMI ACCTGC 1 cut(s) 607
BspPI GGATC 1 cut(s) 1121
BspQI GCTCTTC 2 cut(s) 32, 56
BspTNI GGTCTC 1 cut(s) 1057
BsrBI CCGCTC 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 1267
BsrI ACTGG 2 cut(s) 72, 1103
BssECI CCNNGG 6 cut(s) 9, 485, 541, 752, 938, 987
BssMI GATC 3 cut(s) 1126, 1134, 1245
BssNI GRCGYC 3 cut(s) 1007, 1028, 1209
BssT1I CCWWGG 4 cut(s) 9, 541, 752, 987
Bst2UI CCWGG 1 cut(s) 940
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 5 cut(s) 32, 56, 399, 470, 1097
BstACI GRCGYC 3 cut(s) 1007, 1028, 1209
BstAUI TGTACA 1 cut(s) 1267
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 122, 267, 470, 836
BstDSI CCRYGG 2 cut(s) 485, 987
BstEII GGTNACC 2 cut(s) 109, 933
BstF5I GGATG 7 cut(s) 76, 152, 481, 512, 718, 983, 997
BstFNI CGCG 1 cut(s) 128
BstH2I RGCGCY 2 cut(s) 24, 436
BstHHI GCGC 4 cut(s) 23, 128, 435, 976
BstKTI GATC 3 cut(s) 1129, 1137, 1248
BstMAI GTCTC 4 cut(s) 472, 1057, 1161, 1187
BstMBI GATC 3 cut(s) 1126, 1134, 1245
BstMWI GCNNNNNNNGC 3 cut(s) 156, 1034, 1115
BstNI CCWGG 1 cut(s) 940
BstNSI RCATGY 3 cut(s) 345, 856, 877
BstPI GGTNACC 2 cut(s) 109, 933
BstSCI CCNGG 1 cut(s) 938
BstSFI CTRYAG 2 cut(s) 132, 555
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 118, 569
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 1245
BstXI CCANNNNNNTGG 1 cut(s) 946
BstYI RGATCY 1 cut(s) 1245
BsuRI GGCC 4 cut(s) 83, 307, 766, 810
BtgI CCRYGG 2 cut(s) 485, 987
BtgZI GCGATG 1 cut(s) 200
BtrI CACGTC 1 cut(s) 1279
BtsCI GGATG 7 cut(s) 76, 152, 481, 512, 718, 983, 997
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 140
CciI TCATGA 1 cut(s) 1159
CfoI GCGC 4 cut(s) 23, 128, 435, 976
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 4 cut(s) 148, 1015, 1017, 1217
Csp6I GTAC 3 cut(s) 727, 969, 1268
CviAII CATG 8 cut(s) 342, 533, 853, 874, 988, 1000, 1160, 1271
CviQI GTAC 3 cut(s) 727, 969, 1268
DdeI CTNAG 4 cut(s) 122, 267, 470, 836
DpnI GATC 3 cut(s) 1128, 1136, 1247
DpnII GATC 3 cut(s) 1126, 1134, 1245
DraIII CACNNNGTG 1 cut(s) 1016
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 5 cut(s) 32, 56, 399, 470, 1097
EarI CTCTTC 5 cut(s) 32, 56, 399, 470, 1097
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 4 cut(s) 9, 541, 752, 987
Eco147I AGGCCT 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 1057
Eco47III AGCGCT 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 77, 672
Eco91I GGTNACC 2 cut(s) 109, 933
EcoICRI GAGCTC 1 cut(s) 49
EcoO65I GGTNACC 2 cut(s) 109, 933
EcoRI GAATTC 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 938
EcoT14I CCWWGG 4 cut(s) 9, 541, 752, 987
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 4 cut(s) 9, 541, 752, 987
Esp3I CGTCTC 1 cut(s) 1161
FaeI CATG 8 cut(s) 345, 536, 856, 877, 991, 1003, 1163, 1274
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 2 cut(s) 773, 1220
FatI CATG 8 cut(s) 341, 532, 852, 873, 987, 999, 1159, 1270
FauNDI CATATG 1 cut(s) 670
FbaI TGATCA 1 cut(s) 1134
Fnu4HI GCNGC 4 cut(s) 129, 132, 558, 977
FokI GGATG 7 cut(s) 83, 159, 468, 499, 725, 970, 1004
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 4 cut(s) 129, 132, 558, 977
FspBI CTAG 4 cut(s) 1050, 1086, 1092, 1263
GlaI GCGC 4 cut(s) 22, 127, 434, 975
GluI GCNGC 4 cut(s) 129, 132, 558, 977
GsaI CCCAGC 2 cut(s) 266, 968
HaeII RGCGCY 2 cut(s) 24, 436
HaeIII GGCC 4 cut(s) 83, 307, 766, 810
HgaI GACGC 4 cut(s) 148, 1015, 1017, 1217
HhaI GCGC 4 cut(s) 23, 128, 435, 976
Hin1I GRCGYC 3 cut(s) 1007, 1028, 1209
Hin1II CATG 8 cut(s) 345, 536, 856, 877, 991, 1003, 1163, 1274
Hin6I GCGC 4 cut(s) 21, 126, 433, 974
HinP1I GCGC 4 cut(s) 21, 126, 433, 974
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 2 cut(s) 776, 1082
HpaI GTTAAC 1 cut(s) 228
HphI GGTGA 4 cut(s) 103, 464, 557, 1015
Hpy166II GTNNAC 2 cut(s) 228, 1268
Hpy188I TCNGA 5 cut(s) 28, 65, 156, 367, 1234
Hpy188III TCNNGA 2 cut(s) 55, 1160
Hpy8I GTNNAC 2 cut(s) 228, 1268
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 52, 100, 820
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 1278
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 1034, 1115
HpyF3I CTNAG 4 cut(s) 122, 267, 470, 836
HpySE526I ACGT 1 cut(s) 1278
Hsp92I GRCGYC 3 cut(s) 1007, 1028, 1209
Hsp92II CATG 8 cut(s) 345, 536, 856, 877, 991, 1003, 1163, 1274
HspAI GCGC 4 cut(s) 21, 126, 433, 974
Ksp22I TGATCA 1 cut(s) 1134
KspAI GTTAAC 1 cut(s) 228
Kzo9I GATC 3 cut(s) 1126, 1134, 1245
LguI GCTCTTC 2 cut(s) 32, 56
LmnI GCTCC 2 cut(s) 156, 961
Lsp1109I GCAGC 2 cut(s) 118, 569
LweI GCATC 3 cut(s) 137, 223, 521
MaeI CTAG 4 cut(s) 1050, 1086, 1092, 1263
MaeII ACGT 1 cut(s) 1278
MaeIII GTNAC 6 cut(s) 109, 136, 452, 933, 1003, 1029
MalI GATC 3 cut(s) 1128, 1136, 1247
MbiI CCGCTC 1 cut(s) 76
MboI GATC 3 cut(s) 1126, 1134, 1245
MflI RGATCY 1 cut(s) 1245
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 7 cut(s) 329, 420, 501, 536, 768, 865, 1227
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 3 cut(s) 43, 51, 134
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 7 cut(s) 227, 255, 390, 663, 702, 771, 870
MspA1I CMGCKG 1 cut(s) 650
MspR9I CCNGG 1 cut(s) 940
MvaI CCWGG 1 cut(s) 940
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 3 cut(s) 156, 1034, 1115
NcoI CCATGG 1 cut(s) 987
NdeI CATATG 1 cut(s) 670
NdeII GATC 3 cut(s) 1126, 1134, 1245
NlaIII CATG 8 cut(s) 345, 536, 856, 877, 991, 1003, 1163, 1274
NlaIV GGNNCC 3 cut(s) 306, 576, 1045
NmuCI GTSAC 4 cut(s) 109, 452, 1003, 1029
NspI RCATGY 3 cut(s) 345, 856, 877
PagI TCATGA 1 cut(s) 1159
PceI AGGCCT 1 cut(s) 810
PciI ACATGT 1 cut(s) 873
PciSI GCTCTTC 2 cut(s) 32, 56
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 1082
PflMI CCANNNNNTGG 1 cut(s) 1016
PkrI GCNGC 4 cut(s) 130, 133, 559, 978
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
PscI ACATGT 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 938
PspEI GGTNACC 2 cut(s) 109, 933
PspFI CCCAGC 2 cut(s) 262, 964
PspGI CCWGG 1 cut(s) 938
PspN4I GGNNCC 3 cut(s) 306, 576, 1045
PspPI GGNCC 1 cut(s) 305
PstI CTGCAG 2 cut(s) 136, 559
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 1245
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 3 cut(s) 728, 970, 1269
RsaNI GTAC 3 cut(s) 727, 969, 1268
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 2 cut(s) 32, 56
SaqAI TTAA 7 cut(s) 227, 255, 390, 663, 702, 771, 870
SatI GCNGC 4 cut(s) 129, 132, 558, 977
Sau3AI GATC 3 cut(s) 1126, 1134, 1245
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 1 cut(s) 940
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 3 cut(s) 137, 223, 521
SfcI CTRYAG 2 cut(s) 132, 555
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SpeI ACTAGT 1 cut(s) 1262
Sse9I AATT 7 cut(s) 329, 420, 501, 536, 768, 865, 1227
SseBI AGGCCT 1 cut(s) 810
SsiI CCGC 5 cut(s) 76, 114, 128, 977, 1047
SspI AATATT 1 cut(s) 1168
SspMI CTAG 4 cut(s) 1050, 1086, 1092, 1263
SstI GAGCTC 1 cut(s) 51
StuI AGGCCT 1 cut(s) 810
StyD4I CCNGG 1 cut(s) 938
StyI CCWWGG 4 cut(s) 9, 541, 752, 987
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 1281
TasI AATT 7 cut(s) 329, 420, 501, 536, 768, 865, 1227
TatI WGTACW 2 cut(s) 726, 1267
TauI GCSGC 2 cut(s) 131, 979
TfiI GAWTC 1 cut(s) 1082
Tru1I TTAA 7 cut(s) 227, 255, 390, 663, 702, 771, 870
Tru9I TTAA 7 cut(s) 227, 255, 390, 663, 702, 771, 870
TseFI GTSAC 4 cut(s) 109, 452, 1003, 1029
TseI GCWGC 2 cut(s) 131, 557
Tsp45I GTSAC 4 cut(s) 109, 452, 1003, 1029
TspDTI ATGAA 4 cut(s) 549, 582, 758, 857
TspGWI ACGGA 3 cut(s) 474, 1094, 1143
Van91I CCANNNNNTGG 1 cut(s) 1016
XapI RAATTY 2 cut(s) 329, 536
XceI RCATGY 3 cut(s) 345, 856, 877
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 4 cut(s) 1050, 1086, 1092, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.