Rorug06G0033700

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000872
Physical Location & Seq
Reverse (-)
4114538 .. 4119083
4546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0033700.1

Sequence Viewer

Length: 1278 bp
ATGGCGGTGGAGTATGTGTGTTGCAGTAGCGGCTTCTTCATTCACATACTGGTAATCGTGTTTCTGGTATGTTTCGCGGGGCTAATGTCTGGGCTCACCTTGGGCCTCATGTCCCTGAGTCTCGTCGATCTTGAAGTCTTGGCCAAGTCAGGGAAGCCCAGCAGTCGCAAGCATGCTGCAAAGATATTGCCAGTTGTGAAAAAGCAGCACCTGTTGCTTTGCACCCTACTAATTTGCAATGCTGTTGCAATGGAGGCACTTCCCATTTTCCTGGATGGTTTAGTGCCAGCTTGGGGTGCAATTCTAATTTCGGTGACACTAATTCTTCTGTTTGGTGAGATTATACCACAATCTGTTTGTTCCCGTTATGGTTTGGCGATAGGTGCAGCAGTGACTCCATTTGTCCGTGTCCTTCTGTGGGTCTGCTTTCCTCTTGCATATCCAATTAGCAAGTTATTAGATTATCTTCTCGGCCATGGACATGTAGCTCTGTTTCGCAGAGCGGAGTTGAAAACGCTTGTAGATATGCATGGCAATGAGGCCGGAAAAGGTGGAGAATTGACACATGATGAGACAACAATTATTGCTGGAGCACTTGGACTCAGTGAGAAAACTGCCCGTGATGCCATGACTCCTATAGCTGAAACTTTTGCAATTGATATCAATGCCAAGCTTGACAGGAATTTGATGAATCGGATAATGGAGAAAGGGCATAGTAGAGTGCCAGTTTACTATGAAGAGCCTACAAACATAATTGGACTTGTCCTGGTCAAAAACTTGTTGACAGTTCATCCAGAAGAGGAAACTCCTGTAAAGAATGTCACTATACGCAAGATCCCAAGGGTTCAAGAAACATTGCCGTTGTATGACATACTGAATGAATTTCAGAAAGGTCACAGTCACATGGCTATTGTTATAAGACGGTGCAATACTCAGGAGCAGCCCAATGGCAATACAGCTGACAGTCCAGTGAAAGAAGTGAAAGTGGACATTGATGGTGAAAAGCCTCCTCAGGAGAAGATTTTGAAGAGCAAAAGATCACTGAACAAATGGAAGAGCTTTCCTAACAGTGGGAATATTTCACAGAGGAGTGGGTCCAGAAGCAAGAAATGGTCCAAGGACATGTATTCAGACATCCTTGAGATAGATGGTGAAGCACTCCCAAAGCTCCCAGAAGAGGAAGTGGCTGTTGGCATTATAACAATGGAAGATGTTATCGAAGAGCTTTTACAGGAGGAGATATTTGATGAAACTGATCATCAGTATGAGGACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

425

Amino Acids

47.08

Weight (kDa)

5.8

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 17 - 189 2.6e-35 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 917, 1199
AccBSI CCGCTC 1 cut(s) 503
AccII CGCG 1 cut(s) 77
AciI CCGC 4 cut(s) 5, 30, 77, 503
AclWI GGATC 1 cut(s) 829
AcoI YGGCCR 2 cut(s) 141, 472
AcsI RAATTY 2 cut(s) 682, 881
AfiI CCNNNNNNNGG 5 cut(s) 150, 293, 418, 1070, 1177
AflIII ACRYGT 2 cut(s) 481, 1122
AgsI TTSAA 4 cut(s) 134, 511, 848, 1027
AjnI CCWGG 2 cut(s) 270, 765
AjuI GAANNNNNNNTTGG 2 cut(s) 1173, 1205
AluBI AGCT 8 cut(s) 290, 488, 641, 673, 959, 1059, 1168, 1225
AluI AGCT 8 cut(s) 290, 488, 641, 673, 959, 1059, 1168, 1225
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 2 cut(s) 125, 566
AlwI GGATC 1 cut(s) 829
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 4 cut(s) 103, 141, 472, 540
ApeKI GCWGC 4 cut(s) 176, 205, 386, 940
ApoI RAATTY 2 cut(s) 682, 881
AspS9I GGNCC 3 cut(s) 103, 1095, 1113
AsuHPI GGTGA 5 cut(s) 88, 325, 347, 1010, 1163
AvaII GGWCC 2 cut(s) 1095, 1113
AxyI CCTNAGG 1 cut(s) 1011
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 1212, 1244
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 4 cut(s) 163, 217, 398, 952
BccI CCATC 3 cut(s) 269, 989, 1142
BceAI ACGGC 1 cut(s) 844
BciT130I CCWGG 2 cut(s) 272, 767
BclI TGATCA 1 cut(s) 1255
BcoDI GTCTC 2 cut(s) 125, 566
BfmI CTRYAG 1 cut(s) 636
BisI GCNGC 5 cut(s) 31, 177, 206, 387, 941
BlsI GCNGC 5 cut(s) 32, 178, 207, 388, 942
Bme1390I CCNGG 2 cut(s) 272, 767
Bme18I GGWCC 2 cut(s) 1095, 1113
BmgT120I GGNCC 3 cut(s) 103, 1095, 1113
BmiI GGNNCC 1 cut(s) 1096
BmrFI CCNGG 2 cut(s) 272, 767
BmsI GCATC 1 cut(s) 613
BpmI CTGGAG 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 1160
BsaJI CCNNGG 4 cut(s) 99, 475, 839, 1116
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 293, 418, 1070, 1177
Bse1I ACTGG 4 cut(s) 54, 191, 725, 968
Bse21I CCTNAGG 1 cut(s) 1011
Bse3DI GCAATG 4 cut(s) 244, 255, 541, 854
BseBI CCWGG 2 cut(s) 272, 767
BseDI CCNNGG 4 cut(s) 99, 475, 839, 1116
BseGI GGATG 3 cut(s) 280, 790, 1134
BseLI CCNNNNNNNGG 5 cut(s) 150, 293, 418, 1070, 1177
BseMI GCAATG 4 cut(s) 244, 255, 541, 854
BseMII CTCAG 4 cut(s) 107, 616, 947, 1025
BseNI ACTGG 4 cut(s) 54, 191, 725, 968
BseRI GAGGAG 3 cut(s) 999, 1102, 1250
BseXI GCAGC 4 cut(s) 163, 217, 398, 952
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 4 cut(s) 105, 143, 474, 542
BsiHKAI GWGCWC 1 cut(s) 595
BsiSI CCGG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 5 cut(s) 150, 293, 418, 1070, 1177
BsmAI GTCTC 2 cut(s) 125, 566
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 4 cut(s) 105, 143, 474, 542
Bsp1286I GDGCHC 2 cut(s) 96, 595
Bsp143I GATC 4 cut(s) 127, 834, 1037, 1255
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 4 cut(s) 5, 30, 77, 503
BspANI GGCC 4 cut(s) 105, 143, 474, 542
BspCNI CTCAG 4 cut(s) 108, 615, 946, 1024
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 1096
BspPI GGATC 1 cut(s) 829
BspQI GCTCTTC 4 cut(s) 732, 1022, 1049, 1215
BsrBI CCGCTC 1 cut(s) 503
BsrDI GCAATG 4 cut(s) 244, 255, 541, 854
BsrI ACTGG 4 cut(s) 54, 191, 725, 968
BssECI CCNNGG 4 cut(s) 99, 475, 839, 1116
BssMI GATC 4 cut(s) 127, 834, 1037, 1255
BssT1I CCWWGG 4 cut(s) 99, 475, 839, 1116
Bst2UI CCWGG 2 cut(s) 272, 767
Bst4CI ACNGT 5 cut(s) 787, 899, 924, 965, 1070
Bst6I CTCTTC 6 cut(s) 732, 792, 1022, 1049, 1170, 1215
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 3 cut(s) 170, 174, 288
BstDEI CTNAG 4 cut(s) 116, 602, 933, 1011
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 3 cut(s) 280, 790, 1134
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 4 cut(s) 130, 837, 1040, 1258
BstMAI GTCTC 2 cut(s) 125, 566
BstMBI GATC 4 cut(s) 127, 834, 1037, 1255
BstMWI GCNNNNNNNGC 6 cut(s) 30, 214, 254, 296, 383, 623
BstNI CCWGG 2 cut(s) 272, 767
BstNSI RCATGY 3 cut(s) 176, 485, 1126
BstSCI CCNGG 2 cut(s) 270, 765
BstSFI CTRYAG 1 cut(s) 636
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 4 cut(s) 163, 217, 398, 952
BstX2I RGATCY 1 cut(s) 834
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 834
Bsu36I CCTNAGG 1 cut(s) 1011
BsuRI GGCC 4 cut(s) 105, 143, 474, 542
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 3 cut(s) 280, 790, 1134
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 5 cut(s) 396, 610, 975, 1040, 1075
Cac8I GCNNGC 3 cut(s) 170, 174, 288
CaiI CAGNNNCTG 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 103, 1095, 1113
CviAII CATG 9 cut(s) 109, 173, 476, 482, 530, 566, 628, 904, 1123
DdeI CTNAG 4 cut(s) 116, 602, 933, 1011
DpnI GATC 4 cut(s) 129, 836, 1039, 1257
DpnII GATC 4 cut(s) 127, 834, 1037, 1255
EaeI YGGCCR 2 cut(s) 141, 472
Eam1104I CTCTTC 6 cut(s) 732, 792, 1022, 1049, 1170, 1215
EarI CTCTTC 6 cut(s) 732, 792, 1022, 1049, 1170, 1215
Eco130I CCWWGG 4 cut(s) 99, 475, 839, 1116
Eco24I GRGCYC 1 cut(s) 96
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 2 cut(s) 1095, 1113
Eco81I CCTNAGG 1 cut(s) 1011
EcoRII CCWGG 2 cut(s) 270, 765
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 4 cut(s) 99, 475, 839, 1116
EcoT22I ATGCAT 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 4 cut(s) 99, 475, 839, 1116
FaeI CATG 9 cut(s) 112, 176, 479, 485, 533, 569, 631, 907, 1126
FaqI GGGAC 1 cut(s) 97
FatI CATG 9 cut(s) 108, 172, 475, 481, 529, 565, 627, 903, 1122
FauI CCCGC 1 cut(s) 70
FbaI TGATCA 1 cut(s) 1255
Fnu4HI GCNGC 5 cut(s) 31, 177, 206, 387, 941
FokI GGATG 3 cut(s) 287, 777, 1121
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 5 cut(s) 31, 177, 206, 387, 941
GluI GCNGC 5 cut(s) 31, 177, 206, 387, 941
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 4 cut(s) 105, 143, 474, 542
HapII CCGG 1 cut(s) 543
Hin1II CATG 9 cut(s) 112, 176, 479, 485, 533, 569, 631, 907, 1126
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 6 cut(s) 118, 394, 600, 631, 691, 1271
HpaII CCGG 1 cut(s) 543
HphI GGTGA 5 cut(s) 88, 325, 347, 1010, 1163
Hpy166II GTNNAC 3 cut(s) 730, 783, 988
Hpy188I TCNGA 3 cut(s) 696, 888, 1132
Hpy188III TCNNGA 6 cut(s) 131, 794, 848, 935, 1013, 1098
Hpy8I GTNNAC 3 cut(s) 730, 783, 988
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 5 cut(s) 787, 899, 924, 965, 1070
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 214, 254, 296, 383, 623
HpyF3I CTNAG 4 cut(s) 116, 602, 933, 1011
Hsp92II CATG 9 cut(s) 112, 176, 479, 485, 533, 569, 631, 907, 1126
Ksp22I TGATCA 1 cut(s) 1255
Kzo9I GATC 4 cut(s) 127, 834, 1037, 1255
LguI GCTCTTC 4 cut(s) 732, 1022, 1049, 1215
LmnI GCTCC 3 cut(s) 590, 937, 1173
Lsp1109I GCAGC 4 cut(s) 163, 217, 398, 952
LweI GCATC 1 cut(s) 613
MaeIII GTNAC 5 cut(s) 313, 391, 820, 893, 899
MalI GATC 4 cut(s) 129, 836, 1039, 1257
MbiI CCGCTC 1 cut(s) 503
MboI GATC 4 cut(s) 127, 834, 1037, 1255
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 2 cut(s) 96, 595
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 5 cut(s) 127, 388, 594, 625, 1265
Mox20I TGGCCA 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 531
MscI TGGCCA 1 cut(s) 143
MslI CAYNNNNRTG 3 cut(s) 480, 534, 1263
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 959
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 2 cut(s) 272, 767
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 2 cut(s) 272, 767
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 6 cut(s) 30, 214, 254, 296, 383, 623
NcoI CCATGG 1 cut(s) 475
NdeII GATC 4 cut(s) 127, 834, 1037, 1255
NlaIII CATG 9 cut(s) 112, 176, 479, 485, 533, 569, 631, 907, 1126
NlaIV GGNNCC 1 cut(s) 1096
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 5 cut(s) 313, 391, 820, 893, 899
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 3 cut(s) 176, 485, 1126
PaeI GCATGC 1 cut(s) 176
PciI ACATGT 2 cut(s) 481, 1122
PciSI GCTCTTC 4 cut(s) 732, 1022, 1049, 1215
PfeI GAWTC 1 cut(s) 691
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 5 cut(s) 32, 178, 207, 388, 942
PleI GAGTC 5 cut(s) 126, 388, 594, 625, 1265
PpsI GAGTC 5 cut(s) 126, 388, 594, 625, 1265
PscI ACATGT 2 cut(s) 481, 1122
PsiI TTATAA 2 cut(s) 917, 1199
Psp6I CCWGG 2 cut(s) 270, 765
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 2 cut(s) 270, 765
PspN4I GGNNCC 1 cut(s) 1096
PspPI GGNCC 3 cut(s) 103, 1095, 1113
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 834
PvuII CAGCTG 1 cut(s) 959
RseI CAYNNNNRTG 3 cut(s) 480, 534, 1263
SapI GCTCTTC 4 cut(s) 732, 1022, 1049, 1215
SatI GCNGC 5 cut(s) 31, 177, 206, 387, 941
Sau3AI GATC 4 cut(s) 127, 834, 1037, 1255
Sau96I GGNCC 3 cut(s) 103, 1095, 1113
SchI GAGTC 5 cut(s) 127, 388, 594, 625, 1265
ScrFI CCNGG 2 cut(s) 272, 767
SduI GDGCHC 2 cut(s) 96, 595
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 1 cut(s) 636
SinI GGWCC 2 cut(s) 1095, 1113
SmiMI CAYNNNNRTG 3 cut(s) 480, 534, 1263
SmlI CTYRAG 1 cut(s) 1139
SmoI CTYRAG 1 cut(s) 1139
SphI GCATGC 1 cut(s) 176
SsiI CCGC 4 cut(s) 5, 30, 77, 503
SspI AATATT 1 cut(s) 1078
StyD4I CCNGG 2 cut(s) 270, 765
StyI CCWWGG 4 cut(s) 99, 475, 839, 1116
TaaI ACNGT 5 cut(s) 787, 899, 924, 965, 1070
TaqI TCGA 2 cut(s) 126, 1218
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 1 cut(s) 691
TscAI CASTG 5 cut(s) 396, 610, 975, 1047, 1075
TseFI GTSAC 5 cut(s) 313, 391, 820, 893, 899
TseI GCWGC 4 cut(s) 176, 205, 386, 940
Tsp45I GTSAC 5 cut(s) 313, 391, 820, 893, 899
TspDTI ATGAA 6 cut(s) 28, 704, 750, 779, 894, 1263
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 5 cut(s) 396, 610, 975, 1047, 1075
VpaK11BI GGWCC 2 cut(s) 1095, 1113
XapI RAATTY 2 cut(s) 682, 881
XceI RCATGY 3 cut(s) 176, 485, 1126
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.