Rmu_sc0002938.1_g000002

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002938.1
OG0000872
Physical Location & Seq
Forward (+)
5450 .. 7469
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002938.1_g000002.1.cds

Sequence Viewer

Length: 870 bp
atgcctgccaaggacgacagcgcctccgacaaggagaagagccttgagctcttcctgaaggtcggactggatgagcggacggccaaaaacacaatcgctaaccagaaggtcaccgccaatctaagcgcggctgcagttactgatggatgcagtcggagcgtcggtaatctgctctacacggttgctacaaagtttccagcaaatgcccttgtgcatcgccccgtgttaacacagtacattgtgtcttcaaagattaaaatcccagctcagttagatgcggctctgtcattttttacaaacacggggccagaaaacttcaaaacaagtgaatttgaacaagcatgtggtgttggtgttgaagtttcagaagaagaaatcaagcaatctgttaatgaggtttttgaagagaataagtctgcaattttggaacagcgctataaaacaaatgtgggtgacttatttgcacatcttaggaagagacatccgtgggctgaccccaaaattgtcaaggcatccattgatacaaagttgcatgaattccttggtgaaaggactgcagcagatgatgaaaaggttcctaaaaagaagaaagagaaacctgctaaagtagaggaaaaagctattgctgtttctacccctgaacaaccagctgaagaaattcttaatccatatgcgatattccctcaaccagaggaaaactttaaggttcatacttcagttttctttagtgatggttctattctgagatgttgcaactcaaaggaactccttgaaaaacacttaagtgtgactggtggaagagttttaactcgctttcctcctgaaccgaatggatatctacatataggccatgccaaggtaaggatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

289

Amino Acids

32.01

Weight (kDa)

7.09

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 607
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 1 cut(s) 128
AciI CCGC 4 cut(s) 76, 114, 128, 278
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 3 cut(s) 329, 536, 657
AcuI CTGAAG 3 cut(s) 77, 672, 699
AfaI GTAC 1 cut(s) 236
AfeI AGCGCT 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 856, 861
AflII CTTAAG 1 cut(s) 781
AgsI TTSAA 6 cut(s) 249, 319, 335, 359, 404, 773
AleI CACNNNNGTG 1 cut(s) 783
AluBI AGCT 4 cut(s) 49, 266, 620, 650
AluI AGCT 4 cut(s) 49, 266, 620, 650
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 472
AlwNI CAGNNNCTG 1 cut(s) 140
Aor51HI AGCGCT 1 cut(s) 434
AoxI GGCC 3 cut(s) 81, 305, 847
ApeKI GCWGC 2 cut(s) 131, 557
ApoI RAATTY 3 cut(s) 329, 536, 657
Asp700I GAANNNNTTC 2 cut(s) 573, 657
AspLEI GCGC 3 cut(s) 23, 128, 435
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 3 cut(s) 103, 464, 557
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 118, 569
BccI CCATC 2 cut(s) 137, 725
BceAI ACGGC 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 472
BfmI CTRYAG 2 cut(s) 132, 555
BfoI RGCGCY 2 cut(s) 24, 436
BfrI CTTAAG 1 cut(s) 781
BfuAI ACCTGC 1 cut(s) 607
BisI GCNGC 4 cut(s) 129, 132, 279, 558
BlsI GCNGC 4 cut(s) 130, 133, 280, 559
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 306, 576
BmsI GCATC 4 cut(s) 137, 223, 265, 521
BpiI GAAGAC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 9, 485, 541, 855
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 148, 178
Bsc4I CCNNNNNNNGG 2 cut(s) 856, 861
Bse1I ACTGG 2 cut(s) 72, 796
Bse8I GATNNNNATC 1 cut(s) 257
BseDI CCNNGG 4 cut(s) 9, 485, 541, 855
BseGI GGATG 4 cut(s) 76, 152, 481, 512
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 856, 861
BseMII CTCAG 2 cut(s) 281, 734
BseNI ACTGG 2 cut(s) 72, 796
BseXI GCAGC 2 cut(s) 118, 569
BseYI CCCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 83, 307, 849
BsiHKAI GWGCWC 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 856, 861
BsmAI GTCTC 1 cut(s) 472
BsnI GGCC 3 cut(s) 83, 307, 849
Bsp1286I GDGCHC 1 cut(s) 51
BspACI CCGC 4 cut(s) 76, 114, 128, 278
BspANI GGCC 3 cut(s) 83, 307, 849
BspCNI CTCAG 2 cut(s) 280, 735
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 2 cut(s) 306, 576
BspMAI CTGCAG 2 cut(s) 136, 559
BspMI ACCTGC 1 cut(s) 607
BspQI GCTCTTC 2 cut(s) 32, 56
BspTI CTTAAG 1 cut(s) 781
BsrBI CCGCTC 1 cut(s) 76
BsrI ACTGG 2 cut(s) 72, 796
BssECI CCNNGG 4 cut(s) 9, 485, 541, 855
BssT1I CCWWGG 3 cut(s) 9, 541, 855
Bst4CI ACNGT 2 cut(s) 181, 234
Bst6I CTCTTC 5 cut(s) 32, 56, 399, 470, 793
BstAFI CTTAAG 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 122, 267, 470, 743
BstDSI CCRYGG 1 cut(s) 485
BstEII GGTNACC 1 cut(s) 109
BstF5I GGATG 4 cut(s) 76, 152, 481, 512
BstFNI CGCG 1 cut(s) 128
BstH2I RGCGCY 2 cut(s) 24, 436
BstHHI GCGC 3 cut(s) 23, 128, 435
BstMAI GTCTC 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 345
BstPI GGTNACC 1 cut(s) 109
BstSFI CTRYAG 2 cut(s) 132, 555
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 118, 569
BstV2I GAAGAC 1 cut(s) 237
BsuRI GGCC 3 cut(s) 83, 307, 849
BtgI CCRYGG 1 cut(s) 485
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 4 cut(s) 76, 152, 481, 512
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 3 cut(s) 23, 128, 435
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 342, 533, 851
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 4 cut(s) 122, 267, 470, 743
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 5 cut(s) 32, 56, 399, 470, 793
EarI CTCTTC 5 cut(s) 32, 56, 399, 470, 793
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 3 cut(s) 9, 541, 855
Eco24I GRGCYC 1 cut(s) 51
Eco32I GATATC 1 cut(s) 836
Eco47III AGCGCT 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 3 cut(s) 77, 672, 699
Eco91I GGTNACC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 536
EcoRV GATATC 1 cut(s) 836
EcoT14I CCWWGG 3 cut(s) 9, 541, 855
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 3 cut(s) 9, 541, 855
FaeI CATG 3 cut(s) 345, 536, 854
FaiI YATR 9 cut(s) 343, 438, 534, 670, 672, 711, 843, 845, 852
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FatI CATG 3 cut(s) 341, 532, 850
FauNDI CATATG 1 cut(s) 670
Fnu4HI GCNGC 4 cut(s) 129, 132, 279, 558
FokI GGATG 4 cut(s) 83, 159, 468, 499
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 4 cut(s) 129, 132, 279, 558
GlaI GCGC 3 cut(s) 22, 127, 434
GluI GCNGC 4 cut(s) 129, 132, 279, 558
GsaI CCCAGC 1 cut(s) 266
HaeII RGCGCY 2 cut(s) 24, 436
HaeIII GGCC 3 cut(s) 83, 307, 849
HgaI GACGC 1 cut(s) 148
HhaI GCGC 3 cut(s) 23, 128, 435
Hin1II CATG 3 cut(s) 345, 536, 854
Hin6I GCGC 3 cut(s) 21, 126, 433
HinP1I GCGC 3 cut(s) 21, 126, 433
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HpaI GTTAAC 1 cut(s) 228
HphI GGTGA 3 cut(s) 103, 464, 557
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 5 cut(s) 28, 65, 156, 367, 744
Hpy188III TCNNGA 2 cut(s) 55, 821
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 52, 100
HpyCH4III ACNGT 2 cut(s) 181, 234
HpyCH4V TGCA 8 cut(s) 134, 150, 214, 419, 464, 532, 557, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 4 cut(s) 122, 267, 470, 743
Hsp92II CATG 3 cut(s) 345, 536, 854
HspAI GCGC 3 cut(s) 21, 126, 433
KspAI GTTAAC 1 cut(s) 228
LguI GCTCTTC 2 cut(s) 32, 56
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 2 cut(s) 118, 569
LweI GCATC 4 cut(s) 137, 223, 265, 521
MaeIII GTNAC 4 cut(s) 109, 136, 452, 787
MbiI CCGCTC 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 5 cut(s) 329, 420, 501, 536, 657
MmeI TCCRAC 3 cut(s) 43, 51, 134
MnlI CCTC 6 cut(s) 34, 388, 604, 685, 693, 828
MroXI GAANNNNTTC 2 cut(s) 573, 657
MseI TTAA 8 cut(s) 227, 255, 390, 663, 702, 782, 806, 868
MslI CAYNNNNRTG 1 cut(s) 783
MspA1I CMGCKG 1 cut(s) 650
MspCI CTTAAG 1 cut(s) 781
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeI CATATG 1 cut(s) 670
NlaIII CATG 3 cut(s) 345, 536, 854
NlaIV GGNNCC 2 cut(s) 306, 576
NmuCI GTSAC 3 cut(s) 109, 452, 787
NspI RCATGY 1 cut(s) 345
OliI CACNNNNGTG 1 cut(s) 783
PciSI GCTCTTC 2 cut(s) 32, 56
PdmI GAANNNNTTC 2 cut(s) 573, 657
PkrI GCNGC 4 cut(s) 130, 133, 280, 559
Psp124BI GAGCTC 1 cut(s) 51
PspEI GGTNACC 1 cut(s) 109
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 306, 576
PspPI GGNCC 1 cut(s) 305
PstI CTGCAG 2 cut(s) 136, 559
PstNI CAGNNNCTG 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 783
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 2 cut(s) 32, 56
SaqAI TTAA 8 cut(s) 227, 255, 390, 663, 702, 782, 806, 868
SatI GCNGC 4 cut(s) 129, 132, 279, 558
Sau96I GGNCC 1 cut(s) 305
SduI GDGCHC 1 cut(s) 51
SfaNI GCATC 4 cut(s) 137, 223, 265, 521
SfcI CTRYAG 2 cut(s) 132, 555
SmiMI CAYNNNNRTG 1 cut(s) 783
SmlI CTYRAG 2 cut(s) 44, 781
SmoI CTYRAG 2 cut(s) 44, 781
Sse9I AATT 5 cut(s) 329, 420, 501, 536, 657
SsiI CCGC 4 cut(s) 76, 114, 128, 278
SstI GAGCTC 1 cut(s) 51
StyI CCWWGG 3 cut(s) 9, 541, 855
TaaI ACNGT 2 cut(s) 181, 234
TasI AATT 5 cut(s) 329, 420, 501, 536, 657
TatI WGTACW 1 cut(s) 234
TauI GCSGC 2 cut(s) 131, 281
Tru1I TTAA 8 cut(s) 227, 255, 390, 663, 702, 782, 806, 868
Tru9I TTAA 8 cut(s) 227, 255, 390, 663, 702, 782, 806, 868
TseFI GTSAC 3 cut(s) 109, 452, 787
TseI GCWGC 2 cut(s) 131, 557
Tsp45I GTSAC 3 cut(s) 109, 452, 787
TspDTI ATGAA 3 cut(s) 549, 582, 698
TspGWI ACGGA 1 cut(s) 474
Vha464I CTTAAG 1 cut(s) 781
XapI RAATTY 3 cut(s) 329, 536, 657
XceI RCATGY 1 cut(s) 345
XmnI GAANNNNTTC 2 cut(s) 573, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.