RchiOBHm_Chr6g0267571

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000872
Physical Location & Seq
Forward (+)
24418615 .. 24419616
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24000

Sequence Viewer

Length: 468 bp
ATGATTCATCTGAGTCGCCTCGAGTACCACATCAGAGAAGAGCTCAATAAAACAGCTCCTCGCACAATGGTTGTGCTTGATCTTGTAAAGGTCGTCATTACCAACTGGAAAGATGACCTCATAAAGGACTGTGAAGCAAGAAAGTGGCCCGACTCTGAGGCGGAGTCCTACAAGGTTCCATTTTCCAAGGTGTTGTACATTGAGCGCTCCAATTTTCGCCTAAAGACTCAAAATACTACTTCGGACTTGCTCCTGGAGAATCTGCCCTGCTCAGACACGCATGTCCTATCAAGTGTGTGGATGCAAAGGATGTTTGTTTTAGCTGAGGATAATGAGACTGTCCTTGAGATACAGGTCGAGTATGATCAGGAGAAGAAGACAAAGCCAAAGGTTTATAATCCATCTGTTGTGCTGGAATTGAAAATGTGCTTCAAAATTAGGCACTGCTGCTTCTTACTCATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

155

Amino Acids

18.38

Weight (kDa)

6.43

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c_C PF03950 19 - 76 1.5e-11 tRNA synthetases class I (E and Q), anti-codon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AasI GACNNNNNNGTC 1 cut(s) 281
AciI CCGC 1 cut(s) 161
AfaI GTAC 2 cut(s) 26, 197
AfeI AGCGCT 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 421, 433
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 43, 56, 323
AluI AGCT 3 cut(s) 43, 56, 323
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 20
Aor51HI AGCGCT 1 cut(s) 206
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 20
BanII GRGCYC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 434
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 208
BisI GCNGC 1 cut(s) 448
BlsI GCNGC 1 cut(s) 449
Bme1390I CCNGG 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 383
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 306, 315
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 3 cut(s) 147, 285, 315
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 434
BshFI GGCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 329
BsnI GGCC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 2 cut(s) 79, 364
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 3 cut(s) 148, 284, 316
BspLI GGNNCC 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 79, 364
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 131, 340
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 4 cut(s) 11, 156, 271, 324
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 306, 315
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 2 cut(s) 82, 367
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 2 cut(s) 79, 364
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 1 cut(s) 383
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 306, 315
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 442
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 2 cut(s) 25, 196
CviAII CATG 1 cut(s) 281
CviJI RGCY 5 cut(s) 43, 56, 148, 323, 385
CviKI_1 RGCY 5 cut(s) 43, 56, 148, 323, 385
CviQI GTAC 2 cut(s) 25, 196
DdeI CTNAG 4 cut(s) 11, 156, 271, 324
DpnI GATC 2 cut(s) 81, 366
DpnII GATC 2 cut(s) 79, 364
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 45
Eco47III AGCGCT 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 284
FaiI YATR 4 cut(s) 122, 282, 363, 396
FatI CATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 448
FokI GGATG 2 cut(s) 313, 322
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 448
GlaI GCGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 448
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 148
HhaI GCGC 1 cut(s) 207
Hin1II CATG 1 cut(s) 284
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 6 cut(s) 4, 13, 152, 164, 226, 259
Hpy188I TCNGA 6 cut(s) 12, 35, 157, 244, 274, 467
Hpy188III TCNNGA 1 cut(s) 368
HpyCH4III ACNGT 2 cut(s) 131, 340
HpyCH4V TGCA 1 cut(s) 304
HpyF3I CTNAG 4 cut(s) 11, 156, 271, 324
Hsp92II CATG 1 cut(s) 284
HspAI GCGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 2 cut(s) 79, 364
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 3 cut(s) 61, 212, 255
LpnPI CCDG 7 cut(s) 91, 239, 266, 280, 338, 353, 398
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 1 cut(s) 291
MalI GATC 2 cut(s) 81, 366
MboI GATC 2 cut(s) 79, 364
MboII GAAGA 3 cut(s) 50, 385, 388
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 211, 416, 435
MlyI GAGTC 4 cut(s) 22, 146, 173, 220
MnlI CCTC 5 cut(s) 29, 69, 128, 151, 319
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
NdeII GATC 2 cut(s) 79, 364
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 177
NspI RCATGY 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 4, 259
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 1 cut(s) 449
PleI GAGTC 4 cut(s) 21, 146, 172, 220
PpsI GAGTC 4 cut(s) 21, 146, 172, 220
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 147
PspXI VCTCGAGB 1 cut(s) 20
RsaI GTAC 2 cut(s) 26, 197
RsaNI GTAC 2 cut(s) 25, 196
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 33
SatI GCNGC 1 cut(s) 448
Sau3AI GATC 2 cut(s) 79, 364
Sau96I GGNCC 1 cut(s) 147
SchI GAGTC 4 cut(s) 22, 146, 173, 220
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 45
SetI ASST 9 cut(s) 45, 58, 93, 120, 177, 192, 325, 357, 393
SfaNI GCATC 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 20, 344
SmoI CTYRAG 2 cut(s) 20, 344
Sse9I AATT 3 cut(s) 211, 416, 435
SsiI CCGC 1 cut(s) 161
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 131, 340
TaqI TCGA 2 cut(s) 21, 357
TasI AATT 3 cut(s) 211, 416, 435
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 2 cut(s) 4, 259
TscAI CASTG 1 cut(s) 449
TseI GCWGC 1 cut(s) 447
TspRI CASTG 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 122
XceI RCATGY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.