Rmu_sc0003124.1_g000003

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003124.1
Physical Location & Seq
Reverse (-)
8690 .. 9058
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003124.1_g000003.1.cds

Sequence Viewer

Length: 240 bp
atggttgtgcttgatcctgtaaaggtcgtcattaccaactggaaagatggcttcataaaggactgtgaagcaagaaagtggcccgattctgaggcagagtcctacgaggttccactttccaaggatgttggtttagccgaggataatgagacactcgctgagctacgggtcgagtatgatccggtccgattgtttgacagactattcaactcagagaatcctgctgagcttgatgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

79

Amino Acids

9.09

Weight (kDa)

4.22

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 8, 173
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 163, 229
AluI AGCT 2 cut(s) 163, 229
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 8, 173
AoxI GGCC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 81, 184
AvaII GGWCC 1 cut(s) 184
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 238
BlpI GCTNAGC 2 cut(s) 159, 225
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 81, 184
BmiI GGNNCC 1 cut(s) 111
Bpu1102I GCTNAGC 2 cut(s) 159, 225
BsaJI CCNNGG 2 cut(s) 120, 138
BsaWI WCCGGW 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 120, 138
BseGI GGATG 1 cut(s) 130
BseMII CTCAG 4 cut(s) 81, 150, 216, 225
BseNI ACTGG 1 cut(s) 44
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 13, 178
Bsp1720I GCTNAGC 2 cut(s) 159, 225
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 4 cut(s) 82, 151, 217, 224
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 2 cut(s) 8, 173
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 120, 138
BssMI GATC 2 cut(s) 13, 178
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 65
BstDEI CTNAG 4 cut(s) 90, 159, 211, 225
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 16, 181
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 13, 178
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 81, 184
CpoI CGGWCCG 1 cut(s) 184
CspI CGGWCCG 1 cut(s) 184
CviJI RGCY 5 cut(s) 51, 82, 137, 163, 229
CviKI_1 RGCY 5 cut(s) 51, 82, 137, 163, 229
DdeI CTNAG 4 cut(s) 90, 159, 211, 225
DpnI GATC 2 cut(s) 15, 180
DpnII GATC 2 cut(s) 13, 178
Eco130I CCWWGG 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaiI YATR 2 cut(s) 56, 177
FokI GGATG 1 cut(s) 137
FspBI CTAG 1 cut(s) 238
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 182
HinfI GANTC 3 cut(s) 86, 98, 217
HpaII CCGG 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 91, 188, 214
HpyCH4III ACNGT 1 cut(s) 65
HpyF3I CTNAG 4 cut(s) 90, 159, 211, 225
Kzo9I GATC 2 cut(s) 13, 178
LpnPI CCDG 4 cut(s) 25, 30, 195, 234
MaeI CTAG 1 cut(s) 238
MalI GATC 2 cut(s) 15, 180
MboI GATC 2 cut(s) 13, 178
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 3 cut(s) 85, 100, 133
MspI CCGG 1 cut(s) 182
NdeII GATC 2 cut(s) 13, 178
NlaIV GGNNCC 1 cut(s) 111
NmeAIII GCCGAG 1 cut(s) 163
PfeI GAWTC 2 cut(s) 86, 217
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 2 cut(s) 81, 184
Rsr2I CGGWCCG 1 cut(s) 184
RsrII CGGWCCG 1 cut(s) 184
Sau3AI GATC 2 cut(s) 13, 178
Sau96I GGNCC 2 cut(s) 81, 184
SchI GAGTC 1 cut(s) 107
SetI ASST 4 cut(s) 27, 111, 165, 231
SinI GGWCC 1 cut(s) 184
SspMI CTAG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 171
TfiI GAWTC 2 cut(s) 86, 217
TspDTI ATGAA 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 184
XspI CTAG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.