Rmu_co8125244.1_g000001

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8125244.1
OG0000872
Physical Location & Seq
Forward (+)
1 .. 453
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8125244.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
cctggaaaatctgctctgctcagatacgcatgtcctatcaagtgtgtggatgcaaaagatgttgttttagccgaggataatgagactatccttgagataagggtcgagtatgatccggagaagaagacaaagccaaagggggtgctgcattgggttgctgaaccttctccggggatcaatccactagaagtggaagtccgattgtttgatagactattcaactcagagaatcctgctgagcttgatgactggctttctgatctgaatggaaaatcaaaagtggtaataccaaatgcattcgctgttcctcaacttgcaaaaggtgttgatgttggtgacaagtttcagttcgaaagacttggctattttgtggtcgacaaagattcgactcctgagaagcttgtgtttaatcgtacggtcacactgcgagatagctacaagaatgggaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

150

Amino Acids

16.88

Weight (kDa)

5.3

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 115
AclWI GGATC 2 cut(s) 107, 182
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 3 cut(s) 241, 400, 435
AluI AGCT 3 cut(s) 241, 400, 435
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 2 cut(s) 107, 182
Aor13HI TCCGGA 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 351
BaeI ACNNNNGTAYC 2 cut(s) 16, 49
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 3
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 146
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 3, 171
BmrFI CCNGG 2 cut(s) 3, 171
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 72, 170
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 254
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 3
BseDI CCNNGG 2 cut(s) 72, 170
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 4 cut(s) 34, 228, 237, 384
BseNI ACTGG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 116, 170
BsiWI CGTACG 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 351
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 3 cut(s) 112, 174, 259
Bsp1720I GCTNAGC 1 cut(s) 237
BspCNI CTCAG 4 cut(s) 33, 229, 236, 385
BspEI TCCGGA 1 cut(s) 115
BspPI GGATC 2 cut(s) 107, 182
BspT104I TTCGAA 1 cut(s) 351
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 72, 170
BssMI GATC 3 cut(s) 112, 174, 259
Bst2UI CCWGG 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 20, 223, 237, 393
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 3 cut(s) 115, 177, 262
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 112, 174, 259
BstNI CCWGG 1 cut(s) 3
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 422
Csp6I GTAC 1 cut(s) 414
CviAII CATG 1 cut(s) 30
CviJI RGCY 7 cut(s) 71, 133, 241, 253, 363, 400, 435
CviKI_1 RGCY 7 cut(s) 71, 133, 241, 253, 363, 400, 435
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 4 cut(s) 20, 223, 237, 393
DpnI GATC 3 cut(s) 114, 176, 261
DpnII GATC 3 cut(s) 112, 174, 259
EcoT22I ATGCAT 1 cut(s) 298
FaeI CATG 1 cut(s) 33
FaiI YATR 2 cut(s) 31, 111
FatI CATG 1 cut(s) 29
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 1 cut(s) 185
GluI GCNGC 1 cut(s) 146
HapII CCGG 2 cut(s) 116, 170
Hin1II CATG 1 cut(s) 33
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 3 cut(s) 229, 383, 388
HpaII CCGG 2 cut(s) 116, 170
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 5 cut(s) 23, 200, 226, 259, 264
Hpy188III TCNNGA 2 cut(s) 116, 392
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 4 cut(s) 53, 148, 296, 317
HpyF3I CTNAG 4 cut(s) 20, 223, 237, 393
Hsp92II CATG 1 cut(s) 33
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 112, 174, 259
LpnPI CCDG 6 cut(s) 15, 129, 183, 235, 246, 405
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 335, 418
MalI GATC 3 cut(s) 114, 176, 261
MboI GATC 3 cut(s) 112, 174, 259
MboII GAAGA 2 cut(s) 133, 136
MlyI GAGTC 1 cut(s) 382
MnlI CCTC 2 cut(s) 67, 318
Mph1103I ATGCAT 1 cut(s) 298
MroI TCCGGA 1 cut(s) 115
MseI TTAA 1 cut(s) 408
MspI CCGG 2 cut(s) 116, 170
MspR9I CCNGG 2 cut(s) 3, 171
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 3
NciI CCSGG 1 cut(s) 171
NdeII GATC 3 cut(s) 112, 174, 259
NlaIII CATG 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 335, 418
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 33
NspV TTCGAA 1 cut(s) 351
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 229, 383
Pfl23II CGTACG 1 cut(s) 413
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PspLI CGTACG 1 cut(s) 413
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SalI GTCGAC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 3 cut(s) 112, 174, 259
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 2 cut(s) 3, 171
SetI ASST 5 cut(s) 166, 243, 325, 402, 437
SfaNI GCATC 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 4 cut(s) 105, 351, 375, 386
TfiI GAWTC 2 cut(s) 229, 383
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 2 cut(s) 335, 418
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 2 cut(s) 335, 418
TspRI CASTG 1 cut(s) 429
XceI RCATGY 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 375
XspI CTAG 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.