Rroxscaffold_159G00432900

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000872
Physical Location & Seq
Forward (+)
580452 .. 580992
541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432900.1

Sequence Viewer

Length: 393 bp
ATGCGCGCCAAGGAGAACATCCTTGAGCTCATCTTGAAGGTCGGACTGGACGAGTGGACAACCAAAAACACAATCGCCACCAACAGGGTCACGGCCAATCTGACGGCCGTCATTCACGAGGCTGCAGTTACTGATGGATGCAGTCGAAGCATTGAAAACTTCAAAACAAGTGAATTTGAAGAAGCATGTGGTGTTGGTGTTGAAGTTTCAGAAGAAGAAATCAAGCAATCTGTTAATGAGGCTTTTGAAGAGAATAAATCTGCAATTTTGGAGCAGCGCTATAAAACAAATGTGGGTGGCTTATCGGCACATCTTAGGAAGAGACATTCGTGGGCTGACCCAAAAATTGTTAAGGCAATCATTGATACAAAGTTGCGTGAATTACTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

130

Amino Acids

14.5

Weight (kDa)

5.68

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_synt_1c_R1 PF04558 6 - 53 8.7e-06 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
tRNA_synt_1c_R1 PF04558 52 - 114 3.1e-20 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 6
AcoI YGGCCR 2 cut(s) 93, 105
AcsI RAATTY 1 cut(s) 173
AfeI AGCGCT 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 6 cut(s) 37, 155, 163, 179, 203, 248
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 131
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 2 cut(s) 93, 105
ApeKI GCWGC 2 cut(s) 122, 274
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 3 cut(s) 6, 8, 279
BanII GRGCYC 1 cut(s) 30
BauI CACGAG 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 109, 286
BccI CCATC 1 cut(s) 128
BceAI ACGGC 3 cut(s) 92, 108, 120
BcoDI GTCTC 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 280
BisI GCNGC 2 cut(s) 123, 275
BlsI GCNGC 2 cut(s) 124, 276
BmsI GCATC 1 cut(s) 128
BoxI GACNNNNGTC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 18, 143
BseLI CCNNNNNNNGG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 51
BsePI GCGCGC 1 cut(s) 4
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 2 cut(s) 109, 286
Bsh1236I CGCG 1 cut(s) 6
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 95, 107
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 316
BsnI GGCC 2 cut(s) 95, 107
Bsp1286I GDGCHC 1 cut(s) 30
BspANI GGCC 2 cut(s) 95, 107
BspFNI CGCG 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 127
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 9
BssHII GCGCGC 1 cut(s) 4
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 243, 314
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 18, 143
BstFNI CGCG 1 cut(s) 6
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 3 cut(s) 6, 8, 279
BstMAI GTCTC 1 cut(s) 316
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 109, 286
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 2 cut(s) 95, 107
BtsCI GGATG 2 cut(s) 18, 143
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 131
CfoI GCGC 3 cut(s) 6, 8, 279
CviAII CATG 1 cut(s) 186
CviJI RGCY 7 cut(s) 28, 95, 107, 122, 242, 300, 335
CviKI_1 RGCY 7 cut(s) 28, 95, 107, 122, 242, 300, 335
DdeI CTNAG 1 cut(s) 314
EaeI YGGCCR 2 cut(s) 93, 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 243, 314
EarI CTCTTC 2 cut(s) 243, 314
Ecl136II GAGCTC 1 cut(s) 28
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 278
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 189
FaiI YATR 2 cut(s) 187, 282
FatI CATG 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 123, 275
FokI GGATG 2 cut(s) 5, 150
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 123, 275
GlaI GCGC 3 cut(s) 5, 7, 278
GluI GCNGC 2 cut(s) 123, 275
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 2 cut(s) 95, 107
HhaI GCGC 3 cut(s) 6, 8, 279
Hin1II CATG 1 cut(s) 189
Hin6I GCGC 3 cut(s) 4, 6, 277
HinP1I GCGC 3 cut(s) 4, 6, 277
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 44, 102, 211
Hpy188III TCNNGA 2 cut(s) 34, 116
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 125, 141, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 1 cut(s) 314
Hsp92II CATG 1 cut(s) 189
HspAI GCGC 3 cut(s) 4, 6, 277
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 2 cut(s) 32, 70
Lsp1109I GCAGC 2 cut(s) 109, 286
LweI GCATC 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 88, 127
MboII GAAGA 5 cut(s) 191, 224, 227, 260, 331
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 173, 264, 345, 380
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 2 cut(s) 112, 232
MseI TTAA 3 cut(s) 234, 351, 391
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 147
NlaIII CATG 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 189
PauI GCGCGC 1 cut(s) 4
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PkrI GCNGC 2 cut(s) 124, 276
PshAI GACNNNNGTC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 131
PteI GCGCGC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 234, 351, 391
SatI GCNGC 2 cut(s) 123, 275
SduI GDGCHC 1 cut(s) 30
SetI ASST 2 cut(s) 30, 42
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 4 cut(s) 173, 264, 345, 380
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 1 cut(s) 145
TasI AATT 4 cut(s) 173, 264, 345, 380
Tru1I TTAA 3 cut(s) 234, 351, 391
Tru9I TTAA 3 cut(s) 234, 351, 391
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 122, 274
Tsp45I GTSAC 1 cut(s) 88
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.