Rh1AG063900

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000872
Physical Location & Seq
Forward (+)
10675552 .. 10678253
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG063900.1

Sequence Viewer

Length: 819 bp
ATGCCGGCCAAGGAGAAAACCCTTGAGCTCATGTTGAAGGTCGGACTGGACGAGCGGACGGCCAAAAACACAATGGCCAACAACAAGGTCACGTCCAATCTAAGGGCTGTCATTCACGAGGCTGCAGTTACTGATGGATGCAGTCGAAGCATTGGTAATCTTATATACACGGTTGCAACAAAGTTTCCAGCAAATGCCCTTGTGCATCGCCCGGTATTGGCACAGTACATTGTGTCTTCAAAGATTAAAACTCCAGCTCAGTTAGATGCGGCTTTGTTATTTTTTGCAAATACGGGGCCAGAAAACTTCAAAACAAGTGAATTTGAAGAAGCATGTGGTGTTGGTGTTGAAGTTTCAGAAGAAGAAATCAAGCAATCTATTAATGAGGTTTTTGAAGAGAATAAATCTGCAATTTTGGAGCAGCGCTATAAAACAAATGTGGGTGGCTTATTTGCAGATCTTAGGAAGAGACATCCGTGGGCTGACCCAAAAATTGTCAAGGCATCCATTAATACAAAGTTGGGCGAATTACTTGGTGAAAGGACTGCAGCAGATGATGAAAAGGTTCCTAAAAACAAGAAAGAGAAACCTGCTAAAGTAGAGGAGAAAGCTACTGCTGAAGAAATTCTTAATCCATATGCGATATTCCCTCAACCAGAGGAAAACTTTAAGTCTTTAAGTGTTAAGTACTTAATTTATCGACCTAGCCGTCTCTTCTCTCTGCTAGGGTTTCTCGGTGTCCCTGACATCGAAAAATTGCCAAACTTCATCAATCAAGTATCGATTTCTCTGCCCTTCAATGGCTGGAGGCATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

272

Amino Acids

30.34

Weight (kDa)

7.7

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_synt_1c_R1 PF04558 6 - 163 1.4e-54 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 598
AccBSI CCGCTC 1 cut(s) 55
AciI CCGC 2 cut(s) 55, 269
AcoI YGGCCR 3 cut(s) 6, 60, 75
AcsI RAATTY 2 cut(s) 320, 624
AcuI CTGAAG 1 cut(s) 639
AfaI GTAC 2 cut(s) 227, 689
AfeI AGCGCT 1 cut(s) 425
AfiI CCNNNNNNNGG 3 cut(s) 102, 217, 800
AgsI TTSAA 7 cut(s) 37, 240, 310, 326, 350, 395, 799
AjiI CACGTC 1 cut(s) 93
AluBI AGCT 3 cut(s) 28, 257, 611
AluI AGCT 3 cut(s) 28, 257, 611
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 463, 716
AlwNI CAGNNNCTG 1 cut(s) 131
Aor51HI AGCGCT 1 cut(s) 425
AoxI GGCC 4 cut(s) 6, 60, 75, 296
ApeKI GCWGC 3 cut(s) 122, 421, 548
ApoI RAATTY 2 cut(s) 320, 624
AseI ATTAAT 2 cut(s) 381, 510
Asp700I GAANNNNTTC 2 cut(s) 564, 624
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 548
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 30
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 109, 433, 560
BccI CCATC 1 cut(s) 128
BceAI ACGGC 2 cut(s) 75, 693
BcgI CGANNNNNNTGC 2 cut(s) 772, 806
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 463, 716
BfaI CTAG 3 cut(s) 705, 725, 817
BfmI CTRYAG 2 cut(s) 123, 546
BfoI RGCGCY 1 cut(s) 427
BfuAI ACCTGC 1 cut(s) 598
BglII AGATCT 1 cut(s) 457
BisI GCNGC 4 cut(s) 123, 270, 422, 549
BlsI GCNGC 4 cut(s) 124, 271, 423, 550
BmcAI AGTACT 1 cut(s) 689
Bme1390I CCNGG 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 297, 567
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 4 cut(s) 128, 214, 256, 512
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 782
BsaJI CCNNGG 2 cut(s) 9, 476
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 217, 800
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 782
BseDI CCNNGG 2 cut(s) 9, 476
BseGI GGATG 3 cut(s) 143, 472, 503
BseLI CCNNNNNNNGG 3 cut(s) 102, 217, 800
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 3 cut(s) 109, 433, 560
BshFI GGCC 4 cut(s) 8, 62, 77, 298
BshVI ATCGAT 1 cut(s) 782
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 5, 212
BslFI GGGAC 1 cut(s) 725
BslI CCNNNNNNNGG 3 cut(s) 102, 217, 800
BsmAI GTCTC 2 cut(s) 463, 716
BsmBI CGTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 725
BsnI GGCC 4 cut(s) 8, 62, 77, 298
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 457
BspACI CCGC 2 cut(s) 55, 269
BspANI GGCC 4 cut(s) 8, 62, 77, 298
BspCNI CTCAG 1 cut(s) 271
BspDI ATCGAT 1 cut(s) 782
BspLI GGNNCC 2 cut(s) 297, 567
BspMAI CTGCAG 2 cut(s) 127, 550
BspMI ACCTGC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 9, 476
BssMI GATC 1 cut(s) 457
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 172, 225
Bst6I CTCTTC 3 cut(s) 390, 461, 719
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 101, 258, 461
BstDSI CCRYGG 1 cut(s) 476
BstF5I GGATG 3 cut(s) 143, 472, 503
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 1 cut(s) 460
BstMAI GTCTC 2 cut(s) 463, 716
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 123, 546
BstV1I GCAGC 3 cut(s) 109, 433, 560
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 782
BsuRI GGCC 4 cut(s) 8, 62, 77, 298
BsuTUI ATCGAT 1 cut(s) 782
BtgI CCRYGG 1 cut(s) 476
BtgZI GCGATG 1 cut(s) 191
BtrI CACGTC 1 cut(s) 93
BtsCI GGATG 3 cut(s) 143, 472, 503
BveI ACCTGC 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 131
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 782
Csp6I GTAC 2 cut(s) 226, 688
CviAII CATG 3 cut(s) 31, 333, 812
CviQI GTAC 2 cut(s) 226, 688
DdeI CTNAG 3 cut(s) 101, 258, 461
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
DrdI GACNNNNNNGTC 1 cut(s) 708
DseDI GACNNNNNNGTC 1 cut(s) 708
EaeI YGGCCR 3 cut(s) 6, 60, 75
Eam1104I CTCTTC 3 cut(s) 390, 461, 719
EarI CTCTTC 3 cut(s) 390, 461, 719
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 716
FaeI CATG 3 cut(s) 34, 336, 815
FaiI YATR 8 cut(s) 32, 164, 166, 334, 429, 637, 639, 813
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FaqI GGGAC 1 cut(s) 725
FatI CATG 3 cut(s) 30, 332, 811
FauNDI CATATG 1 cut(s) 637
Fnu4HI GCNGC 4 cut(s) 123, 270, 422, 549
FokI GGATG 3 cut(s) 150, 459, 490
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 4 cut(s) 123, 270, 422, 549
FspBI CTAG 3 cut(s) 705, 725, 817
GlaI GCGC 1 cut(s) 425
GluI GCNGC 4 cut(s) 123, 270, 422, 549
GsuI CTGGAG 1 cut(s) 237
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 4 cut(s) 8, 62, 77, 298
HapII CCGG 2 cut(s) 5, 212
HhaI GCGC 1 cut(s) 426
Hin1II CATG 3 cut(s) 34, 336, 815
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HpaII CCGG 2 cut(s) 5, 212
HphI GGTGA 1 cut(s) 548
Hpy188I TCNGA 2 cut(s) 44, 358
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 31, 805
HpyCH4III ACNGT 2 cut(s) 172, 225
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 8 cut(s) 125, 141, 176, 205, 287, 410, 455, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 3 cut(s) 101, 258, 461
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 3 cut(s) 34, 336, 815
HspAI GCGC 1 cut(s) 424
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 457
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 3 cut(s) 109, 433, 560
LweI GCATC 4 cut(s) 128, 214, 256, 512
MaeI CTAG 3 cut(s) 705, 725, 817
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 88, 127
MalI GATC 1 cut(s) 459
MbiI CCGCTC 1 cut(s) 55
MboI GATC 1 cut(s) 457
MboII GAAGA 8 cut(s) 228, 338, 371, 374, 407, 478, 632, 706
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 7 cut(s) 320, 411, 492, 527, 624, 693, 755
MluNI TGGCCA 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 6 cut(s) 112, 379, 595, 652, 660, 801
Mox20I TGGCCA 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 2 cut(s) 564, 624
MscI TGGCCA 1 cut(s) 77
MseI TTAA 8 cut(s) 246, 381, 510, 630, 669, 677, 684, 692
Msp20I TGGCCA 1 cut(s) 77
MspI CCGG 2 cut(s) 5, 212
MspR9I CCNGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 147
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 637
NdeII GATC 1 cut(s) 457
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 3 cut(s) 34, 336, 815
NlaIV GGNNCC 2 cut(s) 297, 567
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 336
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 706
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 2 cut(s) 564, 624
PkrI GCNGC 4 cut(s) 124, 271, 423, 550
PshBI ATTAAT 2 cut(s) 381, 510
Psp124BI GAGCTC 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 297, 567
PspPI GGNCC 1 cut(s) 296
PstI CTGCAG 2 cut(s) 127, 550
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 2 cut(s) 227, 689
RsaNI GTAC 2 cut(s) 226, 688
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 8 cut(s) 246, 381, 510, 630, 669, 677, 684, 692
SatI GCNGC 4 cut(s) 123, 270, 422, 549
Sau3AI GATC 1 cut(s) 457
Sau96I GGNCC 1 cut(s) 296
ScaI AGTACT 1 cut(s) 689
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 4 cut(s) 128, 214, 256, 512
SfcI CTRYAG 2 cut(s) 123, 546
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 7 cut(s) 320, 411, 492, 527, 624, 693, 755
SsiI CCGC 2 cut(s) 55, 269
SspMI CTAG 3 cut(s) 705, 725, 817
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 172, 225
TaiI ACGT 1 cut(s) 95
TaqI TCGA 4 cut(s) 145, 700, 750, 782
TasI AATT 7 cut(s) 320, 411, 492, 527, 624, 693, 755
TatI WGTACW 2 cut(s) 225, 687
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 8 cut(s) 246, 381, 510, 630, 669, 677, 684, 692
Tru9I TTAA 8 cut(s) 246, 381, 510, 630, 669, 677, 684, 692
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 3 cut(s) 122, 421, 548
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 573, 757
TspGWI ACGGA 1 cut(s) 465
VspI ATTAAT 2 cut(s) 381, 510
XapI RAATTY 2 cut(s) 320, 624
XceI RCATGY 1 cut(s) 336
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XmnI GAANNNNTTC 2 cut(s) 564, 624
XspI CTAG 3 cut(s) 705, 725, 817
ZrmI AGTACT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.