RchiOBHm_Chr1g0324521

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
12282154 .. 12282429
276 bp
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UTR
Exon/CDS
Intron
PRQ55436

Sequence Viewer

Length: 276 bp
ATGCGGCTTTGTTATGTTTTTGCAAATACAGGGACAGAAAACTTCAAAACAAGTGAATTTGAAGAAGCATGTGGTGTTGGTTTTGAAGTTTCAGAAGAAGAAATCGAGCAATCCGTTAATGAGGCTTTTGAAGAGAATAAATCTGCAATTTTGGAGCAGCGCTATAAAACAAATGTGGGTGGCTTATTGGCACATCTTAGGAAGAGACATTCGAGGGCTGACCCAAAAATTGTTAAGGCAATCATTGATACAAAGTTGAGTGAATTACTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

5.19

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_synt_1c_R1 PF04558 5 - 69 4.5e-20 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 56
AfeI AGCGCT 1 cut(s) 161
AgsI TTSAA 4 cut(s) 46, 62, 86, 131
Alw26I GTCTC 1 cut(s) 199
Aor51HI AGCGCT 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 56
AspLEI GCGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 199
BfoI RGCGCY 1 cut(s) 163
BisI GCNGC 2 cut(s) 5, 158
BlsI GCNGC 2 cut(s) 6, 159
BseXI GCAGC 1 cut(s) 169
BslFI GGGAC 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 46
BspACI CCGC 1 cut(s) 4
Bst6I CTCTTC 2 cut(s) 126, 197
BstDEI CTNAG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 162
CviAII CATG 1 cut(s) 69
CviJI RGCY 4 cut(s) 7, 125, 183, 218
CviKI_1 RGCY 4 cut(s) 7, 125, 183, 218
DdeI CTNAG 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 126, 197
EarI CTCTTC 2 cut(s) 126, 197
Eco47III AGCGCT 1 cut(s) 161
FaeI CATG 1 cut(s) 72
FaiI YATR 3 cut(s) 15, 70, 165
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 5, 158
Fsp4HI GCNGC 2 cut(s) 5, 158
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 5, 158
HaeII RGCGCY 1 cut(s) 163
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 23, 146
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 1 cut(s) 15
Lsp1109I GCAGC 1 cut(s) 169
MboII GAAGA 5 cut(s) 74, 107, 110, 143, 214
MluCI AATT 4 cut(s) 56, 147, 228, 263
MnlI CCTC 2 cut(s) 115, 207
MseI TTAA 3 cut(s) 117, 234, 274
NlaIII CATG 1 cut(s) 72
NspI RCATGY 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PkrI GCNGC 2 cut(s) 6, 159
SaqAI TTAA 3 cut(s) 117, 234, 274
SatI GCNGC 2 cut(s) 5, 158
SgeI CNNG 5 cut(s) 42, 63, 81, 118, 225
Sse9I AATT 4 cut(s) 56, 147, 228, 263
SsiI CCGC 1 cut(s) 4
TaqI TCGA 2 cut(s) 105, 212
TasI AATT 4 cut(s) 56, 147, 228, 263
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 3 cut(s) 117, 234, 274
Tru9I TTAA 3 cut(s) 117, 234, 274
TseI GCWGC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 103
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.