RchiOBHm_Chr1g0324551

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
12288649 .. 12288834
186 bp
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UTR
Exon/CDS
Intron
PRQ55438

Sequence Viewer

Length: 186 bp
ATGTCGAAGCGTAAGTTAAATCGACTATTGACTGAAAATTGGGTTGATGGTTGGGATGATCCACACCTTATGACACTAGCTGGTTTACGACGTAGGGGCGTGACATCAACTGCCATTAATACATTTGTTAGAGGAATTGGAATCACCAGAAGTGATTGTGGTATGATTCATCTGAGTTGCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

61

Amino Acids

6.88

Weight (kDa)

10.07

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c PF00749 1 - 52 3e-11 tRNA synthetases class I (E and Q), catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 53
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AlwI GGATC 1 cut(s) 53
AseI ATTAAT 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 136
BccI CCATC 1 cut(s) 41
BfaI CTAG 2 cut(s) 77, 184
BseGI GGATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 164
Bsp143I GATC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 165
BspPI GGATC 1 cut(s) 53
BssMI GATC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 61
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
FaiI YATR 2 cut(s) 71, 164
FokI GGATG 1 cut(s) 68
FspBI CTAG 2 cut(s) 77, 184
HinfI GANTC 2 cut(s) 141, 166
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 174
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 91
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 2 cut(s) 66, 160
MaeI CTAG 2 cut(s) 77, 184
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MluCI AATT 2 cut(s) 37, 135
MnlI CCTC 1 cut(s) 125
MseI TTAA 2 cut(s) 17, 117
NdeII GATC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 141, 166
PshBI ATTAAT 1 cut(s) 117
SaqAI TTAA 2 cut(s) 17, 117
Sau3AI GATC 1 cut(s) 58
SetI ASST 3 cut(s) 69, 82, 94
SgeI CNNG 4 cut(s) 89, 93, 112, 159
Sse9I AATT 2 cut(s) 37, 135
SspMI CTAG 2 cut(s) 77, 184
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 5, 22
TasI AATT 2 cut(s) 37, 135
TfiI GAWTC 2 cut(s) 141, 166
Tru1I TTAA 2 cut(s) 17, 117
Tru9I TTAA 2 cut(s) 17, 117
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 158
VspI ATTAAT 1 cut(s) 117
XspI CTAG 2 cut(s) 77, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.