Rh6CG147900

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000872
Physical Location & Seq
Reverse (-)
19336791 .. 19339091
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG147900.1

Sequence Viewer

Length: 867 bp
ATGTCGAAGCGTAAGTTAAATCGACTAGTGACTGAAAATTGGGTCGATGGTTGGGATGATCCATGCCTTATGACGCTGGCTGGTTTACGACGTAGGGGCGTGACGTCGAGTGCCATTAATACGTTTGTTAGAGGAATTGGAATCACCAGAAGTGATTGTAGTATGATTCATCTGAGTCGCCTCGAGTACCACATCAGAGAAGAGCTCAATAAAACAGCTCCTCGCACAATGGTTGTGCTTGATCCTGTAAAGGTCGTCATTACCAACTGGAAAGATGACCTCATAAAGGACTGTGAAGCAAGAAAGTGGCCCGATTCTGAGGCGGAGTCCTACAAGGTTCCATTTTCCAAGGTGTTGTACATTGAGCGCTCTGATTTTCGCCTTAAAGACTCAAAAGACTACTTCGGACTTGCTCCTGGAAAATCTGCCCTGCTTAGATACGCATGTCCTATAAGGTGTGTGGATGCAAAGGATGTTGTTTTAGCCGAGGATAATGAGACTGTCCTTGAGATACGGGTCGAGTATGATCCGGAGAAGAAGACAAAGCCAAAGGGGGTGCTGCATTGGGTCGCTGAACCTTCTCCTGGGATCGATCCACTCAAAGTGGAAGTCCGATTGTTTGACAGACTATTCAATTCAGAGAATCCTGCTGAGCTTGATGACTGGCTTTCTGATTTGAATGGAAAATCGAAAGTGGTAATACCAAATGCATTTGCTGTTCCCCCGCTTGAGAAAGGTGTTGGTGTTGGTGACAAGTTTCAGTTCGAAAGACTTGGCTATTTTGTGGTTGACAAAGATTCGACTCCTGAGAAGATTGTGTTCAGTCGTACGGTCACACTGCGAGATAGCTACAAGAGTGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

288

Amino Acids

32.81

Weight (kDa)

8.15

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c PF00749 1 - 70 4.3e-12 tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c_C PF03950 73 - 176 6e-19 tRNA synthetases class I (E and Q), anti-codon binding domain
tRNA-synt_1c_C2 PF20974 186 - 264 4.3e-16 tRNA synthetases class I (E and Q), anti-codon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 107
AccIII TCCGGA 1 cut(s) 529
AciI CCGC 2 cut(s) 323, 725
AclWI GGATC 5 cut(s) 53, 236, 521, 587, 596
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 3 cut(s) 188, 359, 829
AfeI AGCGCT 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 286, 584
AgsI TTSAA 2 cut(s) 634, 679
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 2 cut(s) 415, 583
AluBI AGCT 4 cut(s) 205, 218, 655, 849
AluI AGCT 4 cut(s) 205, 218, 655, 849
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 5 cut(s) 53, 236, 521, 587, 596
Ama87I CYCGRG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 529
Aor51HI AGCGCT 1 cut(s) 368
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 594, 626
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 136, 761
AsuII TTCGAA 1 cut(s) 765
AvaI CYCGRG 1 cut(s) 182
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 546
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 417, 585
BcoDI GTCTC 1 cut(s) 491
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 1 cut(s) 560
BlpI GCTNAGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 417, 585
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 417, 585
BmsI GCATC 1 cut(s) 454
BpiI GAAGAC 1 cut(s) 545
BplI GAGNNNNNCTC 2 cut(s) 189, 221
Bpu1102I GCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 765
BpuEI CTTGAG 2 cut(s) 527, 749
Bsa29I ATCGAT 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 348, 486, 584
BsaWI WCCGGW 1 cut(s) 529
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 584
Bse1I ACTGG 2 cut(s) 272, 668
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 2 cut(s) 417, 585
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 348, 486, 584
BseGI GGATG 3 cut(s) 61, 469, 478
BseLI CCNNNNNNNGG 2 cut(s) 286, 584
BseMII CTCAG 4 cut(s) 164, 309, 642, 798
BseNI ACTGG 2 cut(s) 272, 668
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 546
BshFI GGCC 1 cut(s) 310
BshVI ATCGAT 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 1 cut(s) 530
BsiWI CGTACG 1 cut(s) 827
BslI CCNNNNNNNGG 2 cut(s) 286, 584
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 765
Bsp1286I GDGCHC 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 5 cut(s) 58, 241, 526, 588, 592
Bsp1720I GCTNAGC 1 cut(s) 651
BspACI CCGC 2 cut(s) 323, 725
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 4 cut(s) 165, 310, 643, 799
BspDI ATCGAT 1 cut(s) 591
BspEI TCCGGA 1 cut(s) 529
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 5 cut(s) 53, 236, 521, 587, 596
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 2 cut(s) 272, 668
BssECI CCNNGG 3 cut(s) 348, 486, 584
BssMI GATC 5 cut(s) 58, 241, 526, 588, 592
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 417, 585
Bst4CI ACNGT 3 cut(s) 293, 502, 832
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 765
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 5 cut(s) 173, 318, 434, 651, 807
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 3 cut(s) 61, 469, 478
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 5 cut(s) 61, 244, 529, 591, 595
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 5 cut(s) 58, 241, 526, 588, 592
BstNI CCWGG 2 cut(s) 417, 585
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 415, 583
BstV1I GCAGC 1 cut(s) 546
BstV2I GAAGAC 1 cut(s) 545
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 1 cut(s) 310
BsuTUI ATCGAT 1 cut(s) 591
BtsCI GGATG 3 cut(s) 61, 469, 478
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 1 cut(s) 836
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 187, 358, 828
CviAII CATG 2 cut(s) 63, 444
CviQI GTAC 3 cut(s) 187, 358, 828
DdeI CTNAG 5 cut(s) 173, 318, 434, 651, 807
DpnI GATC 5 cut(s) 60, 243, 528, 590, 594
DpnII GATC 5 cut(s) 58, 241, 526, 588, 592
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 415, 583
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 2 cut(s) 66, 447
FaiI YATR 7 cut(s) 64, 71, 164, 284, 445, 452, 525
FatI CATG 2 cut(s) 62, 443
FauI CCCGC 1 cut(s) 732
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 3 cut(s) 68, 476, 485
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 560
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 530
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 369
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 2 cut(s) 66, 447
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HinfI GANTC 9 cut(s) 141, 166, 175, 314, 326, 389, 643, 797, 802
HpaII CCGG 1 cut(s) 530
HphI GGTGA 2 cut(s) 136, 761
Hpy166II GTNNAC 2 cut(s) 86, 790
Hpy188I TCNGA 8 cut(s) 174, 197, 319, 373, 407, 614, 640, 673
Hpy188III TCNNGA 2 cut(s) 530, 806
Hpy8I GTNNAC 2 cut(s) 86, 790
Hpy99I CGWCG 2 cut(s) 93, 109
HpyAV CCTTC 1 cut(s) 588
HpyCH4III ACNGT 3 cut(s) 293, 502, 832
HpyCH4IV ACGT 3 cut(s) 91, 104, 122
HpyCH4V TGCA 3 cut(s) 467, 562, 710
HpyF3I CTNAG 5 cut(s) 173, 318, 434, 651, 807
HpySE526I ACGT 3 cut(s) 91, 104, 122
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 2 cut(s) 66, 447
HspAI GCGC 1 cut(s) 367
Kpn2I TCCGGA 1 cut(s) 529
Kzo9I GATC 5 cut(s) 58, 241, 526, 588, 592
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 2 cut(s) 223, 418
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 26
MaeII ACGT 3 cut(s) 91, 104, 122
MaeIII GTNAC 4 cut(s) 28, 100, 749, 832
MalI GATC 5 cut(s) 60, 243, 528, 590, 594
MboI GATC 5 cut(s) 58, 241, 526, 588, 592
MboII GAAGA 4 cut(s) 212, 547, 550, 823
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 37, 135, 634
MlyI GAGTC 4 cut(s) 184, 335, 383, 796
MnlI CCTC 6 cut(s) 125, 191, 231, 290, 313, 481
Mph1103I ATGCAT 1 cut(s) 712
MroI TCCGGA 1 cut(s) 529
MseI TTAA 3 cut(s) 17, 117, 384
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 2 cut(s) 417, 585
MvaI CCWGG 2 cut(s) 417, 585
NdeII GATC 5 cut(s) 58, 241, 526, 588, 592
NlaIII CATG 2 cut(s) 66, 447
NlaIV GGNNCC 1 cut(s) 339
NmeAIII GCCGAG 1 cut(s) 511
NmuCI GTSAC 4 cut(s) 28, 100, 749, 832
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 1 cut(s) 447
NspV TTCGAA 1 cut(s) 765
PaeR7I CTCGAG 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 195
PfeI GAWTC 5 cut(s) 141, 166, 314, 643, 797
Pfl23II CGTACG 1 cut(s) 827
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 1 cut(s) 561
PleI GAGTC 4 cut(s) 183, 334, 383, 796
PpsI GAGTC 4 cut(s) 183, 334, 383, 796
PshBI ATTAAT 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 415, 583
PspGI CCWGG 2 cut(s) 415, 583
PspLI CGTACG 1 cut(s) 827
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 309
PspXI VCTCGAGB 1 cut(s) 182
RsaI GTAC 3 cut(s) 188, 359, 829
RsaNI GTAC 3 cut(s) 187, 358, 828
SacI GAGCTC 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 17, 117, 384
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 5 cut(s) 58, 241, 526, 588, 592
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 4 cut(s) 184, 335, 383, 796
ScrFI CCNGG 2 cut(s) 417, 585
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 1 cut(s) 454
Sfr274I CTCGAG 1 cut(s) 182
SfuI TTCGAA 1 cut(s) 765
SlaI CTCGAG 1 cut(s) 182
SmlI CTYRAG 3 cut(s) 182, 506, 728
SmoI CTYRAG 3 cut(s) 182, 506, 728
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 3 cut(s) 37, 135, 634
SsiI CCGC 2 cut(s) 323, 725
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 415, 583
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 293, 502, 832
TaiI ACGT 3 cut(s) 94, 107, 125
TasI AATT 3 cut(s) 37, 135, 634
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 5 cut(s) 141, 166, 314, 643, 797
Tru1I TTAA 3 cut(s) 17, 117, 384
Tru9I TTAA 3 cut(s) 17, 117, 384
TscAI CASTG 1 cut(s) 843
TseFI GTSAC 4 cut(s) 28, 100, 749, 832
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 4 cut(s) 28, 100, 749, 832
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 843
VspI ATTAAT 1 cut(s) 117
XagI CCTNNNNNAGG 1 cut(s) 284
XceI RCATGY 1 cut(s) 447
XhoI CTCGAG 1 cut(s) 182
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 105
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.