Rorug01G0047600

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000872
Physical Location & Seq
Forward (+)
7896906 .. 7897517
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0047600.1

Sequence Viewer

Length: 612 bp
ATGGAGGAAGTAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTACAGATCAGAAAAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTTTAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCCAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGAAGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCAATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGATCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGAAAAAAAAAATTTCGGAGTCCCTGACTCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

203

Amino Acids

22.39

Weight (kDa)

8.37

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 467
AciI CCGC 2 cut(s) 51, 235
AclWI GGATC 3 cut(s) 158, 333, 430
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 2 cut(s) 173, 307
AfiI CCNNNNNNNGG 2 cut(s) 467, 604
AgsI TTSAA 2 cut(s) 190, 443
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 5 cut(s) 100, 163, 374, 550, 575
AluI AGCT 5 cut(s) 100, 163, 374, 550, 575
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 3 cut(s) 158, 333, 430
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 586
Asp700I GAANNNNTTC 1 cut(s) 447
Asp718I GGTACC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 123, 246
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 305, 482
AsuII TTCGAA 1 cut(s) 342
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 2 cut(s) 123, 246
AxyI CCTNAGG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 270
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 2 cut(s) 226, 552
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 500
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 20
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 2 cut(s) 123, 246
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 123, 246
BmiI GGNNCC 2 cut(s) 125, 307
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 143
Bpu1102I GCTNAGC 1 cut(s) 551
Bpu14I TTCGAA 1 cut(s) 342
BpuEI CTTGAG 2 cut(s) 77, 566
BpuMI CCSGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 604
Bse21I CCTNAGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 467, 604
BseMII CTCAG 2 cut(s) 312, 565
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 109, 581
BslI CCNNNNNNNGG 2 cut(s) 467, 604
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 109, 581
BsnI GGCC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 225
Bsp119I TTCGAA 1 cut(s) 342
Bsp1286I GDGCHC 3 cut(s) 226, 270, 552
Bsp143I GATC 7 cut(s) 75, 150, 180, 278, 325, 422, 517
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 2 cut(s) 51, 235
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 2 cut(s) 313, 564
BspLI GGNNCC 2 cut(s) 125, 307
BspPI GGATC 3 cut(s) 158, 333, 430
BspT104I TTCGAA 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 305
BssMI GATC 7 cut(s) 75, 150, 180, 278, 325, 422, 517
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 321, 551, 609
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 7 cut(s) 78, 153, 183, 281, 328, 425, 520
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 7 cut(s) 75, 150, 180, 278, 325, 422, 517
BstMWI GCNNNNNNNGC 3 cut(s) 48, 371, 561
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 150, 422
BstYI RGATCY 2 cut(s) 150, 422
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 123, 246
Csp6I GTAC 2 cut(s) 172, 306
CviAII CATG 6 cut(s) 39, 263, 271, 433, 467, 490
CviQI GTAC 2 cut(s) 172, 306
DdeI CTNAG 3 cut(s) 321, 551, 609
DpnI GATC 7 cut(s) 77, 152, 182, 280, 327, 424, 519
DpnII GATC 7 cut(s) 75, 150, 180, 278, 325, 422, 517
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 226, 552
Eco47I GGWCC 2 cut(s) 123, 246
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 354
Eco81I CCTNAGG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 468
EcoT38I GRGCYC 2 cut(s) 226, 552
FaeI CATG 6 cut(s) 42, 266, 274, 436, 470, 493
FaqI GGGAC 2 cut(s) 109, 581
FatI CATG 6 cut(s) 38, 262, 270, 432, 466, 489
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 2 cut(s) 226, 552
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 177
HapII CCGG 1 cut(s) 23
Hin1II CATG 6 cut(s) 42, 266, 274, 436, 470, 493
HinfI GANTC 6 cut(s) 63, 87, 142, 344, 594, 602
HpaII CCGG 1 cut(s) 23
HphI GGTGA 2 cut(s) 305, 482
Hpy166II GTNNAC 2 cut(s) 214, 249
Hpy188I TCNGA 5 cut(s) 80, 147, 256, 505, 593
Hpy188III TCNNGA 3 cut(s) 190, 211, 227
Hpy8I GTNNAC 2 cut(s) 214, 249
HpyAV CCTTC 2 cut(s) 394, 458
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 274, 353, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 371, 561
HpyF3I CTNAG 3 cut(s) 321, 551, 609
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 6 cut(s) 42, 266, 274, 436, 470, 493
KpnI GGTACC 1 cut(s) 309
Kzo9I GATC 7 cut(s) 75, 150, 180, 278, 325, 422, 517
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 36, 42, 173, 191, 267, 333, 360, 574
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 362
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 10, 485
MalI GATC 7 cut(s) 77, 152, 182, 280, 327, 424, 519
MboI GATC 7 cut(s) 75, 150, 180, 278, 325, 422, 517
MboII GAAGA 5 cut(s) 250, 253, 339, 360, 505
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 2 cut(s) 150, 422
MhlI GDGCHC 3 cut(s) 226, 270, 552
MluCI AATT 2 cut(s) 310, 586
MlyI GAGTC 2 cut(s) 596, 603
MnlI CCTC 8 cut(s) 101, 141, 237, 316, 462, 466, 503, 559
Mph1103I ATGCAT 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 2 cut(s) 336, 390
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 163, 374
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 310
MwoI GCNNNNNNNGC 3 cut(s) 48, 371, 561
NciI CCSGG 1 cut(s) 24
NdeII GATC 7 cut(s) 75, 150, 180, 278, 325, 422, 517
NlaIII CATG 6 cut(s) 42, 266, 274, 436, 470, 493
NlaIV GGNNCC 2 cut(s) 125, 307
NmeAIII GCCGAG 1 cut(s) 584
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 42
NspV TTCGAA 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 4 cut(s) 63, 87, 142, 344
PflMI CCANNNNNTGG 1 cut(s) 467
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 2 cut(s) 596, 602
PpsI GAGTC 2 cut(s) 596, 602
PpuMI RGGWCCY 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 125, 307
PspPI GGNCC 2 cut(s) 123, 246
PspPPI RGGWCCY 1 cut(s) 123
PsuI RGATCY 2 cut(s) 150, 422
PvuII CAGCTG 2 cut(s) 163, 374
RsaI GTAC 2 cut(s) 173, 307
RsaNI GTAC 2 cut(s) 172, 306
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 2 cut(s) 336, 390
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 7 cut(s) 75, 150, 180, 278, 325, 422, 517
Sau96I GGNCC 2 cut(s) 123, 246
SchI GAGTC 2 cut(s) 596, 603
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 3 cut(s) 226, 270, 552
SfaNI GCATC 1 cut(s) 362
SfcI CTRYAG 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 342
SinI GGWCC 2 cut(s) 123, 246
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 2 cut(s) 92, 545
SmoI CTYRAG 2 cut(s) 92, 545
Sse9I AATT 2 cut(s) 310, 586
SsiI CCGC 2 cut(s) 51, 235
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 183, 342
TasI AATT 2 cut(s) 310, 586
TfiI GAWTC 4 cut(s) 63, 87, 142, 344
Tru1I TTAA 2 cut(s) 336, 390
Tru9I TTAA 2 cut(s) 336, 390
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 251, 443, 506
Van91I CCANNNNNTGG 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 123, 246
XapI RAATTY 1 cut(s) 586
XceI RCATGY 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.