AT1G78280

Cupin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000630
Physical Location & Seq
Forward (+)
29452555 .. 29457373
4819 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78280.1

Sequence Viewer

Length: 2832 bp
ATGACGACGTTAGGACAAAGAGATCGCCGACCAGATGCTCTCGGTAGTCTCAGTGTTCTACCAGATGAGACCATCTGTGTTCTTCTCGAATACCTTGCTCCCCGAGATATTGCTCACCTCGCTTGTGTCAGCAGTGTGATGTATATTCTATGTAATGAAGAACCATTGTGGATGAGTTTGTGTCTCAGAAGAGCAAAAGGTCCTCTTGAATACAAAGGTTCTTGGAAAAAAACAACATTGCATCTAGAAGGAGTTACTCAAGAAAATGACGCATACAGAAAATGTTTTCATTTTGATGGATTCATGTCGTTGTACTTGTATAAACGATTCTATAGGTGTAATACATCTCTTGACGGGTTCTCTTTTGATAATGGGAATGTGGAACGTAGGAGAAATATCTCCTTGGATGAGTTTTCTAAGGAATACGACGCCAAGAAACCTGTTTTGCTTTCTGGCCTTGCTGATTCTTGGCCAGCCAGTAATACGTGGACTATCGACCAACTCTCAGAGAAATATGGTGAAGTCCCGTTTAGAATATCTCAGAGGAGCCCCAACAAAATTTCCATGAAGTTCAAGGATTACATCGCATATATGAAAACTCAGCGGGATGAAGATCCTCTATACGTTTTCGATGACAAGTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTTCAAGAAGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCATACAGATGGCTTATAGTTGGTCCGGAGAGGTCTGGTGCATCTTGGCATGTTGACCCAGCTCTTACCAGCGCCTGGAACACCCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTCTAGGTGTTACAGTCCATGTCAATGAAGATGATGGTGATGTCAGCATTGATACACCCTCATCTCTGCAGTGGTGGCTAGACTATTATCCCCTTCTTGCGGACGAAGACAAACCGATTGAGTGCACACTACTACCTGGCGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAATCTTGAACCAACAGTGGCTGTTACCCAGAATTTTGTGAACAAAGAAAACTTTGGGTTCGTGTGCTTGGATATGGCGCCTGGTTACCATCACAAAGGAGTTTGCCGTGCTGGGCTTCTTGCTCTTGATGATGAAAATTCTGAAGATTTGGAAGAAGAAACACACGATGAAGAAGATAATACTTTGAGCTATTCAGACCTTACCAGGAAAGAGAAGAGGACACGGATGAATGGAGGTGGAGAGACTGAAAACCGCGAAGAGGATGTGAATGGAGTATCGAAGAGATATAATATGTGGAAGAATGGATTTTCATATGATATCGATTTCCTCGCTTCATTTCTTGATAAAGAAAGAGATCATTACAATTTCCCATGGTCAATGGGGAACTCTGTAGGCCAACGAGAAATGAGAGCCTGGCTATCCAAGCTTTGGGTTCTGAAGCCTGAGATGAGAGAACTAATATGGAAGGGAGCATGCATTGCTTTAAATGCTGAGAAATGGTTGCGATGCCTAGAGGAAGTATGTACTTTCCACAACTTGCCGTTGGTTACCGAAGATGAAAAGCTTCCAGTTGGAACTGGCAGCAACCCTGTTTATCTGTTGTCTGACTATGCGATCAAACTGTTTGTTGAAGGAGGGCTAGAACAATCTATGTACGGTCTTGGTACTGAGCTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTGAAGTTCTAGCAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCTTGGGATGGCAAGAGAATCCCAGATATTATCTCTAGCTCCAGTTTCGATTTTGATGCATCCATGTTAAACAGCGAATTCCCATTTGGTATTTGGAATAAAACGCTACGTGAACATAAAAACCAGGGGAAGCCAGCACCCGATTCTTTTGGTTCATTGAGTTCACATGTTTGGCCATATATTATAACCAAAAGATGCAAAGGGAAGATTTTTGCCCAACTAAGAGATGATCTAACCTGGAACGACGCTCAGAACCTGGCTTTCTTTCTCGGACAACAACTACGCAACCTTCATCTACTTCCATATCCACCGGTCACACGTCCGGAGTTGTTGAATGTGAATGCTGTTCATGAGGAGTTGAACATTCCAGCAGAATGGAAAGTTTTTGTCGATGCTCTGTGCCAAAAGAAGAAGGACGTCACTAGTCGTCTGGAAAACTGGGGAAATCCGATACCTCGGGCTCTGATGACCAAGATAGACGAATACATTCCCGATGACTTTTTTGTAGATTTACTCCACGTCTTCAAGGAGACAAATGGTGGAGATGAAATCAAGCCCTGCACCTGGATACACTCAGACGTAATGGATGACAACATTCACATGGAACCATACGCAGATGATTCAGTTGATGGTCAACACAACTCATGGCGTCCCAGTCATATTCTTGACTTCAGCGATTTAACCATAGGAGATCCCATCTGCGACTTGATACCAATATACTTGGACGTCTTTAGAGGAGACGCTGATCTTCTTAAGAAGCTTCTAGAAAATTATGGACTTCCATTAATCAGAAGTAGATCTTCAGAGAACGGAACAACAAAAACAGCAGACAGTACGAGGAAGAAAGTATTGTCTCCATCCTACCGTACAATGTGTTACTGTATATTACATGAAGAAAATGTGTTGGGTTCAATATTCAGTATTTGGGACGAACTTCGGACTGCTGAATCATGGGAACAAGTTGAGCAAACTGTTTGGAGTCTACTTAACACCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

943

Amino Acids

108.5

Weight (kDa)

5.02

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 18 - 63 2.4e-06 F-box-like
Cupin_8 PF13621 138 - 364 2.8e-23 Cupin-like domain
JmjC PF02373 249 - 362 1.5e-11 JmjC domain, hydroxylase
APH PF01636 651 - 872 5.3e-08 Phosphotransferase enzyme family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2018
AatII GACGTC 2 cut(s) 2253, 2562
AccB1I GGYRCC 1 cut(s) 1126
AccB7I CCANNNNNTGG 2 cut(s) 810, 1479
AccI GTMKAC 1 cut(s) 2815
AccII CGCG 1 cut(s) 1305
AccIII TCCGGA 2 cut(s) 760, 2155
AciI CCGC 5 cut(s) 604, 828, 968, 1303, 1794
AclWI GGATC 3 cut(s) 608, 1825, 2519
AcoI YGGCCR 3 cut(s) 470, 1744, 2006
AcsI RAATTY 4 cut(s) 558, 1081, 1186, 1910
AcuI CTGAAG 5 cut(s) 1212, 1508, 1800, 2488, 2619
AcyI GRCGYC 5 cut(s) 429, 1127, 2250, 2482, 2559
AfaI GTAC 6 cut(s) 314, 1576, 1706, 1717, 2668, 2701
AfiI CCNNNNNNNGG 6 cut(s) 810, 967, 1309, 1479, 1841, 2397
AflII CTTAAG 1 cut(s) 2585
AflIII ACRYGT 2 cut(s) 1999, 2150
AgeI ACCGGT 1 cut(s) 2143
AhlI ACTAGT 1 cut(s) 2255
AjiI CACGTC 2 cut(s) 2153, 2353
AjuI GAANNNNNNNTTGG 2 cut(s) 1902, 1934
AluBI AGCT 8 cut(s) 650, 797, 1239, 1477, 1615, 1723, 1872, 2593
AluI AGCT 8 cut(s) 650, 797, 1239, 1477, 1615, 1723, 1872, 2593
Alw21I GWGCWC 1 cut(s) 995
Alw26I GTCTC 7 cut(s) 53, 62, 188, 1286, 2357, 2565, 2691
Alw44I GTGCAC 1 cut(s) 991
AlwI GGATC 3 cut(s) 608, 1825, 2519
AlwNI CAGNNNCTG 3 cut(s) 810, 1070, 2089
Ama87I CYCGRG 2 cut(s) 102, 2289
Aor13HI TCCGGA 2 cut(s) 760, 2155
AoxI GGCC 5 cut(s) 454, 470, 1444, 1744, 2006
ApaLI GTGCAC 1 cut(s) 991
ApeKI GCWGC 2 cut(s) 650, 1632
ApoI RAATTY 4 cut(s) 558, 1081, 1186, 1910
AseI ATTAAT 1 cut(s) 2618
AsiGI ACCGGT 1 cut(s) 2143
Asp700I GAANNNNTTC 2 cut(s) 1614, 2319
AspLEI GCGC 2 cut(s) 809, 1129
AspS9I GGNCC 2 cut(s) 200, 758
AsuC2I CCSGG 1 cut(s) 1748
AsuHPI GGTGA 3 cut(s) 107, 530, 917
AsuII TTCGAA 1 cut(s) 1809
AvaI CYCGRG 2 cut(s) 102, 2289
AvaII GGWCC 2 cut(s) 200, 758
BaeGI GKGCMC 2 cut(s) 684, 995
BalI TGGCCA 2 cut(s) 472, 2008
BanI GGYRCC 1 cut(s) 1126
BanII GRGCYC 2 cut(s) 551, 2296
BbsI GAAGAC 2 cut(s) 981, 2347
Bbv12I GWGCWC 1 cut(s) 995
BbvI GCAGC 2 cut(s) 637, 1644
BccI CCATC 9 cut(s) 80, 290, 738, 896, 1146, 1835, 2456, 2537, 2698
BceAI ACGGC 2 cut(s) 1140, 1576
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 1871, 1905
BciVI GTATCC 3 cut(s) 861, 1055, 2394
BcnI CCSGG 1 cut(s) 1748
BcoDI GTCTC 7 cut(s) 53, 62, 188, 1286, 2357, 2565, 2691
BcuI ACTAGT 1 cut(s) 2255
BfaI CTAG 9 cut(s) 245, 872, 947, 1562, 1691, 1787, 1869, 2256, 2597
BfmI CTRYAG 4 cut(s) 331, 673, 935, 1440
BfoI RGCGCY 2 cut(s) 810, 1130
BfrI CTTAAG 1 cut(s) 2585
BfuI GTATCC 3 cut(s) 861, 1055, 2394
BglII AGATCT 2 cut(s) 711, 2630
BisI GCNGC 2 cut(s) 651, 1633
BlsI GCNGC 2 cut(s) 652, 1634
Bme18I GGWCC 2 cut(s) 200, 758
BmeT110I CYCGRG 2 cut(s) 102, 2289
BmgBI CACGTC 2 cut(s) 2153, 2353
BmgT120I GGNCC 2 cut(s) 200, 758
BmiI GGNNCC 3 cut(s) 548, 1128, 2439
BmrI ACTGGG 2 cut(s) 2281, 2481
BmsI GCATC 8 cut(s) 25, 250, 785, 1547, 1879, 1901, 2018, 2215
BmuI ACTGGG 2 cut(s) 2281, 2481
BpiI GAAGAC 2 cut(s) 981, 2347
BpmI CTGGAG 2 cut(s) 639, 1858
Bpu14I TTCGAA 1 cut(s) 1809
BpuEI CTTGAG 2 cut(s) 243, 1745
BpuMI CCSGG 1 cut(s) 1748
Bsa29I ATCGAT 1 cut(s) 1371
BsaAI YACGTR 2 cut(s) 486, 1943
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 5 cut(s) 429, 1127, 2250, 2482, 2559
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 6 cut(s) 402, 856, 1421, 1835, 1957, 2288
BsaWI WCCGGW 3 cut(s) 760, 2143, 2155
Bsc4I CCNNNNNNNGG 6 cut(s) 810, 967, 1309, 1479, 1841, 2397
Bse118I RCCGGY 1 cut(s) 2143
Bse1I ACTGG 6 cut(s) 477, 1619, 1633, 1875, 2276, 2487
Bse3DI GCAATG 2 cut(s) 236, 1527
Bse8I GATNNNNATC 1 cut(s) 612
BseAI TCCGGA 2 cut(s) 760, 2155
BseCI ATCGAT 1 cut(s) 1371
BseDI CCNNGG 6 cut(s) 402, 856, 1421, 1835, 1957, 2288
BseGI GGATG 9 cut(s) 177, 412, 613, 1281, 1318, 1846, 1892, 2425, 2690
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 6 cut(s) 810, 967, 1309, 1479, 1841, 2397
BseMI GCAATG 2 cut(s) 236, 1527
BseNI ACTGG 6 cut(s) 477, 1619, 1633, 1875, 2276, 2487
BseRI GAGGAG 3 cut(s) 559, 2201, 2583
BseSI GKGCMC 2 cut(s) 684, 995
BseXI GCAGC 2 cut(s) 637, 1644
BseYI CCCAGC 2 cut(s) 793, 1160
BsgI GTGCAG 1 cut(s) 2377
Bsh1236I CGCG 1 cut(s) 1305
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 5 cut(s) 456, 472, 1446, 1746, 2008
BshNI GGYRCC 1 cut(s) 1126
BshTI ACCGGT 1 cut(s) 2143
BshVI ATCGAT 1 cut(s) 1371
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 995
BsiHKCI CYCGRG 2 cut(s) 102, 2289
BsiSI CCGG 4 cut(s) 761, 1747, 2144, 2156
BslFI GGGAC 4 cut(s) 509, 1817, 2469, 2774
BslI CCNNNNNNNGG 6 cut(s) 810, 967, 1309, 1479, 1841, 2397
BsmAI GTCTC 7 cut(s) 53, 62, 188, 1286, 2357, 2565, 2691
BsmBI CGTCTC 1 cut(s) 2565
BsmFI GGGAC 4 cut(s) 509, 1817, 2469, 2774
BsmI GAATGC 1 cut(s) 2179
BsnI GGCC 5 cut(s) 456, 472, 1446, 1746, 2008
Bso31I GGTCTC 1 cut(s) 62
BsoBI CYCGRG 2 cut(s) 102, 2289
Bsp119I TTCGAA 1 cut(s) 1809
Bsp1286I GDGCHC 4 cut(s) 551, 684, 995, 2296
Bsp13I TCCGGA 2 cut(s) 760, 2155
Bsp19I CCATGG 1 cut(s) 1421
BspACI CCGC 5 cut(s) 604, 828, 968, 1303, 1794
BspANI GGCC 5 cut(s) 456, 472, 1446, 1746, 2008
BspDI ATCGAT 1 cut(s) 1371
BspEI TCCGGA 2 cut(s) 760, 2155
BspFNI CGCG 1 cut(s) 1305
BspHI TCATGA 1 cut(s) 2182
BspLI GGNNCC 3 cut(s) 548, 1128, 2439
BspMAI CTGCAG 1 cut(s) 939
BspPI GGATC 3 cut(s) 608, 1825, 2519
BspQI GCTCTTC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 1809
BspT107I GGYRCC 1 cut(s) 1126
BspTI CTTAAG 1 cut(s) 2585
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 2 cut(s) 236, 1527
BsrFI RCCGGY 1 cut(s) 2143
BsrI ACTGG 6 cut(s) 477, 1619, 1633, 1875, 2276, 2487
BssAI RCCGGY 1 cut(s) 2143
BssECI CCNNGG 6 cut(s) 402, 856, 1421, 1835, 1957, 2288
BssNI GRCGYC 5 cut(s) 429, 1127, 2250, 2482, 2559
BssT1I CCWWGG 3 cut(s) 402, 1421, 1835
Bst4CI ACNGT 9 cut(s) 883, 1043, 1066, 1674, 1709, 2666, 2699, 2714, 2806
Bst6I CTCTTC 4 cut(s) 184, 1259, 1302, 1325
BstACI GRCGYC 5 cut(s) 429, 1127, 2250, 2482, 2559
BstAFI CTTAAG 1 cut(s) 2585
BstAPI GCANNNNNTGC 1 cut(s) 1529
BstBAI YACGTR 2 cut(s) 486, 1943
BstBI TTCGAA 1 cut(s) 1809
BstC8I GCNNGC 4 cut(s) 474, 1525, 1792, 1968
BstDSI CCRYGG 1 cut(s) 1421
BstEII GGTNACC 2 cut(s) 1133, 1597
BstF5I GGATG 9 cut(s) 177, 412, 613, 1281, 1318, 1846, 1892, 2425, 2690
BstFNI CGCG 1 cut(s) 1305
BstH2I RGCGCY 2 cut(s) 810, 1130
BstHHI GCGC 2 cut(s) 809, 1129
BstMAI GTCTC 7 cut(s) 53, 62, 188, 1286, 2357, 2565, 2691
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 5 cut(s) 119, 943, 1474, 1529, 1538
BstNSI RCATGY 3 cut(s) 788, 1527, 2003
BstPI GGTNACC 2 cut(s) 1133, 1597
BstSFI CTRYAG 4 cut(s) 331, 673, 935, 1440
BstSLI GKGCMC 2 cut(s) 684, 995
BstUI CGCG 1 cut(s) 1305
BstV1I GCAGC 2 cut(s) 637, 1644
BstV2I GAAGAC 2 cut(s) 981, 2347
BstX2I RGATCY 5 cut(s) 613, 711, 1817, 2524, 2630
BstXI CCANNNNNNTGG 3 cut(s) 744, 1032, 2208
BstYI RGATCY 5 cut(s) 613, 711, 1817, 2524, 2630
Bsu15I ATCGAT 1 cut(s) 1371
BsuI GTATCC 3 cut(s) 861, 1055, 2394
BsuRI GGCC 5 cut(s) 456, 472, 1446, 1746, 2008
BsuTUI ATCGAT 1 cut(s) 1371
BtgI CCRYGG 1 cut(s) 1421
BtgZI GCGATG 2 cut(s) 568, 1570
BtrI CACGTC 2 cut(s) 2153, 2353
BtsCI GGATG 9 cut(s) 177, 412, 613, 1281, 1318, 1846, 1892, 2425, 2690
BtsI GCAGTG 2 cut(s) 139, 944
BtsIMutI CAGTG 5 cut(s) 58, 139, 944, 1039, 1071
Cac8I GCNNGC 4 cut(s) 474, 1525, 1792, 1968
CaiI CAGNNNCTG 3 cut(s) 810, 1070, 2089
CciI TCATGA 1 cut(s) 2182
CfoI GCGC 2 cut(s) 809, 1129
Cfr10I RCCGGY 1 cut(s) 2143
Cfr13I GGNCC 2 cut(s) 200, 758
ClaI ATCGAT 1 cut(s) 1371
CseI GACGC 5 cut(s) 278, 437, 2087, 2471, 2582
Csp6I GTAC 6 cut(s) 313, 1575, 1705, 1716, 2667, 2700
CspAI ACCGGT 1 cut(s) 2143
CviQI GTAC 6 cut(s) 313, 1575, 1705, 1716, 2667, 2700
DinI GGCGCC 1 cut(s) 1128
DraI TTTAAA 1 cut(s) 1536
EaeI YGGCCR 3 cut(s) 470, 1744, 2006
Eam1104I CTCTTC 4 cut(s) 184, 1259, 1302, 1325
EarI CTCTTC 4 cut(s) 184, 1259, 1302, 1325
Eco130I CCWWGG 3 cut(s) 402, 1421, 1835
Eco24I GRGCYC 2 cut(s) 551, 2296
Eco31I GGTCTC 1 cut(s) 62
Eco32I GATATC 1 cut(s) 1369
Eco47I GGWCC 2 cut(s) 200, 758
Eco57I CTGAAG 5 cut(s) 1212, 1508, 1800, 2488, 2619
Eco88I CYCGRG 2 cut(s) 102, 2289
Eco91I GGTNACC 2 cut(s) 1133, 1597
EcoO109I RGGNCCY 1 cut(s) 200
EcoO65I GGTNACC 2 cut(s) 1133, 1597
EcoRI GAATTC 1 cut(s) 1910
EcoRV GATATC 1 cut(s) 1369
EcoT14I CCWWGG 3 cut(s) 402, 1421, 1835
EcoT22I ATGCAT 2 cut(s) 1529, 1894
EcoT38I GRGCYC 2 cut(s) 551, 2296
EgeI GGCGCC 1 cut(s) 1128
EheI GGCGCC 1 cut(s) 1128
ErhI CCWWGG 3 cut(s) 402, 1421, 1835
Esp3I CGTCTC 1 cut(s) 2565
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 2617, 2649
FaqI GGGAC 4 cut(s) 509, 1817, 2469, 2774
FauI CCCGC 2 cut(s) 597, 1787
FauNDI CATATG 1 cut(s) 1363
FblI GTMKAC 1 cut(s) 2815
Fnu4HI GCNGC 2 cut(s) 651, 1633
FokI GGATG 9 cut(s) 184, 419, 620, 1288, 1325, 1853, 1879, 2432, 2677
FriOI GRGCYC 2 cut(s) 551, 2296
Fsp4HI GCNGC 2 cut(s) 651, 1633
FspBI CTAG 9 cut(s) 245, 872, 947, 1562, 1691, 1787, 1869, 2256, 2597
GlaI GCGC 2 cut(s) 808, 1128
GluI GCNGC 2 cut(s) 651, 1633
GsaI CCCAGC 2 cut(s) 797, 1164
GsuI CTGGAG 2 cut(s) 639, 1858
HaeII RGCGCY 2 cut(s) 810, 1130
HaeIII GGCC 5 cut(s) 456, 472, 1446, 1746, 2008
HapII CCGG 4 cut(s) 761, 1747, 2144, 2156
HgaI GACGC 5 cut(s) 278, 437, 2087, 2471, 2582
HhaI GCGC 2 cut(s) 809, 1129
Hin1I GRCGYC 5 cut(s) 429, 1127, 2250, 2482, 2559
Hin6I GCGC 2 cut(s) 807, 1127
HinP1I GCGC 2 cut(s) 807, 1127
HincII GTYRAC 2 cut(s) 790, 2468
HindII GTYRAC 2 cut(s) 790, 2468
HindIII AAGCTT 3 cut(s) 1475, 1613, 2591
HpaII CCGG 4 cut(s) 761, 1747, 2144, 2156
HphI GGTGA 3 cut(s) 107, 530, 917
Hpy166II GTNNAC 8 cut(s) 489, 790, 993, 1090, 1946, 1997, 2468, 2816
Hpy8I GTNNAC 8 cut(s) 489, 790, 993, 1090, 1946, 1997, 2468, 2816
Hpy99I CGWCG 3 cut(s) 10, 431, 2081
HpyAV CCTTC 6 cut(s) 242, 971, 1510, 1676, 2132, 2239
HpyCH4III ACNGT 9 cut(s) 883, 1043, 1066, 1674, 1709, 2666, 2699, 2714, 2806
HpyCH4V TGCA 8 cut(s) 241, 776, 937, 993, 1527, 1892, 2031, 2394
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 943, 1474, 1529, 1538
Hsp92I GRCGYC 5 cut(s) 429, 1127, 2250, 2482, 2559
HspAI GCGC 2 cut(s) 807, 1127
KasI GGCGCC 1 cut(s) 1126
Kpn2I TCCGGA 2 cut(s) 760, 2155
LguI GCTCTTC 1 cut(s) 184
LmnI GCTCC 5 cut(s) 103, 546, 658, 1520, 1877
Lsp1109I GCAGC 2 cut(s) 637, 1644
LweI GCATC 8 cut(s) 25, 250, 785, 1547, 1879, 1901, 2018, 2215
MaeI CTAG 9 cut(s) 245, 872, 947, 1562, 1691, 1787, 1869, 2256, 2597
MaeIII GTNAC 8 cut(s) 253, 877, 1072, 1133, 1597, 2146, 2251, 2708
MflI RGATCY 5 cut(s) 613, 711, 1817, 2524, 2630
MhlI GDGCHC 4 cut(s) 551, 684, 995, 2296
MlsI TGGCCA 2 cut(s) 472, 2008
MluCI AATT 7 cut(s) 558, 659, 1081, 1186, 1414, 1910, 2602
MluNI TGGCCA 2 cut(s) 472, 2008
Mly113I GGCGCC 1 cut(s) 1127
MlyI GAGTC 1 cut(s) 2821
MmeI TCCRAC 2 cut(s) 812, 1603
Mox20I TGGCCA 2 cut(s) 472, 2008
Mph1103I ATGCAT 2 cut(s) 1529, 1894
MroI TCCGGA 2 cut(s) 760, 2155
MroXI GAANNNNTTC 2 cut(s) 1614, 2319
MscI TGGCCA 2 cut(s) 472, 2008
MseI TTAA 7 cut(s) 1050, 1535, 1901, 2513, 2586, 2618, 2820
MslI CAYNNNNRTG 4 cut(s) 294, 742, 891, 2432
Msp20I TGGCCA 2 cut(s) 472, 2008
MspA1I CMGCKG 1 cut(s) 604
MspCI CTTAAG 1 cut(s) 2585
MspI CCGG 4 cut(s) 761, 1747, 2144, 2156
Mva1269I GAATGC 1 cut(s) 2179
MvnI CGCG 1 cut(s) 1305
MwoI GCNNNNNNNGC 5 cut(s) 119, 943, 1474, 1529, 1538
NarI GGCGCC 1 cut(s) 1127
NciI CCSGG 1 cut(s) 1748
NcoI CCATGG 1 cut(s) 1421
NdeI CATATG 1 cut(s) 1363
NlaIV GGNNCC 3 cut(s) 548, 1128, 2439
NmuCI GTSAC 2 cut(s) 2146, 2251
NsiI ATGCAT 2 cut(s) 1529, 1894
NspI RCATGY 3 cut(s) 788, 1527, 2003
NspV TTCGAA 1 cut(s) 1809
PaeI GCATGC 1 cut(s) 1527
PagI TCATGA 1 cut(s) 2182
PciI ACATGT 1 cut(s) 1999
PciSI GCTCTTC 1 cut(s) 184
PctI GAATGC 1 cut(s) 2179
PdmI GAANNNNTTC 2 cut(s) 1614, 2319
PfeI GAWTC 9 cut(s) 300, 327, 464, 1754, 1798, 1851, 1976, 2453, 2780
PflMI CCANNNNNTGG 2 cut(s) 810, 1479
PinAI ACCGGT 1 cut(s) 2143
PkrI GCNGC 2 cut(s) 652, 1634
PleI GAGTC 1 cut(s) 2820
PluTI GGCGCC 1 cut(s) 1130
PpsI GAGTC 1 cut(s) 2820
Ppu21I YACGTR 2 cut(s) 486, 1943
PpuMI RGGWCCY 1 cut(s) 200
PscI ACATGT 1 cut(s) 1999
PshBI ATTAAT 1 cut(s) 2618
PsiI TTATAA 1 cut(s) 2018
Psp5II RGGWCCY 1 cut(s) 200
PspEI GGTNACC 2 cut(s) 1133, 1597
PspFI CCCAGC 2 cut(s) 793, 1160
PspN4I GGNNCC 3 cut(s) 548, 1128, 2439
PspPI GGNCC 2 cut(s) 200, 758
PspPPI RGGWCCY 1 cut(s) 200
PstI CTGCAG 1 cut(s) 939
PstNI CAGNNNCTG 3 cut(s) 810, 1070, 2089
PsuI RGATCY 5 cut(s) 613, 711, 1817, 2524, 2630
RsaI GTAC 6 cut(s) 314, 1576, 1706, 1717, 2668, 2701
RsaNI GTAC 6 cut(s) 313, 1575, 1705, 1716, 2667, 2700
RseI CAYNNNNRTG 4 cut(s) 294, 742, 891, 2432
SapI GCTCTTC 1 cut(s) 184
SaqAI TTAA 7 cut(s) 1050, 1535, 1901, 2513, 2586, 2618, 2820
SatI GCNGC 2 cut(s) 651, 1633
Sau96I GGNCC 2 cut(s) 200, 758
SchI GAGTC 1 cut(s) 2821
SduI GDGCHC 4 cut(s) 551, 684, 995, 2296
SfaNI GCATC 8 cut(s) 25, 250, 785, 1547, 1879, 1901, 2018, 2215
SfcI CTRYAG 4 cut(s) 331, 673, 935, 1440
SfoI GGCGCC 1 cut(s) 1128
SfuI TTCGAA 1 cut(s) 1809
SinI GGWCC 2 cut(s) 200, 758
SmiMI CAYNNNNRTG 4 cut(s) 294, 742, 891, 2432
SmlI CTYRAG 3 cut(s) 258, 1724, 2585
SmoI CTYRAG 3 cut(s) 258, 1724, 2585
SpeI ACTAGT 1 cut(s) 2255
SphI GCATGC 1 cut(s) 1527
Sse9I AATT 7 cut(s) 558, 659, 1081, 1186, 1414, 1910, 2602
SsiI CCGC 5 cut(s) 604, 828, 968, 1303, 1794
SspDI GGCGCC 1 cut(s) 1126
SspI AATATT 1 cut(s) 2748
SspMI CTAG 9 cut(s) 245, 872, 947, 1562, 1691, 1787, 1869, 2256, 2597
StyI CCWWGG 3 cut(s) 402, 1421, 1835
TaaI ACNGT 9 cut(s) 883, 1043, 1066, 1674, 1709, 2666, 2699, 2714, 2806
TaqI TCGA 8 cut(s) 87, 495, 630, 1328, 1371, 1809, 1881, 2223
TasI AATT 7 cut(s) 558, 659, 1081, 1186, 1414, 1910, 2602
TatI WGTACW 2 cut(s) 312, 1574
TfiI GAWTC 9 cut(s) 300, 327, 464, 1754, 1798, 1851, 1976, 2453, 2780
Tru1I TTAA 7 cut(s) 1050, 1535, 1901, 2513, 2586, 2618, 2820
Tru9I TTAA 7 cut(s) 1050, 1535, 1901, 2513, 2586, 2618, 2820
TscAI CASTG 5 cut(s) 58, 139, 944, 1046, 1071
TseFI GTSAC 2 cut(s) 2146, 2251
TseI GCWGC 2 cut(s) 650, 1632
Tsp45I GTSAC 2 cut(s) 2146, 2251
TspGWI ACGGA 2 cut(s) 1288, 2658
TspRI CASTG 5 cut(s) 58, 139, 944, 1046, 1071
Van91I CCANNNNNTGG 2 cut(s) 810, 1479
Vha464I CTTAAG 1 cut(s) 2585
VneI GTGCAC 1 cut(s) 991
VpaK11BI GGWCC 2 cut(s) 200, 758
VspI ATTAAT 1 cut(s) 2618
XapI RAATTY 4 cut(s) 558, 1081, 1186, 1910
XbaI TCTAGA 2 cut(s) 244, 2596
XceI RCATGY 3 cut(s) 788, 1527, 2003
XcmI CCANNNNNNNNNTGG 2 cut(s) 1032, 1923
XmiI GTMKAC 1 cut(s) 2815
XmnI GAANNNNTTC 2 cut(s) 1614, 2319
XspI CTAG 9 cut(s) 245, 872, 947, 1562, 1691, 1787, 1869, 2256, 2597
ZraI GACGTC 2 cut(s) 2251, 2560
Zsp2I ATGCAT 2 cut(s) 1529, 1894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.