RchiOBHm_Chr7g0242951

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000630
Physical Location & Seq
Reverse (-)
69253159 .. 69255045
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21773

Sequence Viewer

Length: 1299 bp
ATGCATGGCCTACAAGGCCTCACTGGATTAGCTGATGCATGGGCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGCAGCTCACGTAAAATCTCAATGACATTCAAGGATTATGTTTCATATATGAAAGTTCAGCATGATGAGGATCCGTTTTATATCTTTGATTACAAGATACTCACTTGGTCCCTATGTTTTGGAGAGGTTGAACCTGGTTTGTTGAAAGATAACTGTGTACCTTATCTATTTCAAGAGGACCTTTTTGATGTTTTGGACAAAGATGAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCTGAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACTAGTGCCTGGAATACACTTCTATGTGGTCATAAAAGCATTTTTGTCGTAAAGGCTCCGGCAGTGCTGTTGCTAACTTGCACACTTGCTGGACATATTTGCTCCTTTGTAAGAAAGGTGAATGATTGGGTTTACTTTGGTTTGTTGAGTTTTTCTTTATTCCGTTCATCTCCTCAGTCCCCCCTTCCACACACAAAGAGGAGAAACCCTTCATCATTTGGAATGTTGATCTGTTGCATGCTTATACATTCTCCTCTATCTGTATGGTGGACCTTGTATCTTCCAGGAAGAGTACCTATAGGTGTCACAGTACATGTAAACGAAGAAGACGGTGATGTCAATATTGAAACTCCAACTTCGTTGCCGTGGTGGCTAGATTTTTATCCACTTCTTGCTGATGAAGAGAAGCCCATAGAGTGCACCCAAATGCCGGGGGAGACGATTTTCGTTCCTAGTGTCCTAAATCTTGAACCATCTATTGCTGTTACCCAGAACTTTGTAAATTCTAAGAACTTTGAATTTGTGTGCTTGGATATGGCACCTAAATATTGTCATAAGGGAGTTTGCCGTGCTGGACTACTTGCAGATGATGAAGGCAGTATTGAGGATTCCACAAATCATATACTCTATGGCAAAGATGATTATAATTCCTCAGATATGACTAGGAAAGTAAAAAGAGTTAGAACTCTCAAACCTGGAGAATATCCAAGTAATGAAAGAACTCCCATGTATCTGGATGAAGATAGAGATCATTACAACTCTCCTTGGAGCTCAGGCAATTGCATAGGGCAACAAGAAATAAGAGAATGGTTATTCAAGCTTTGGGTTGGAAAACCAGGAATGAAACACTCAATCTGGAAGGTGTTTTTCTTATTACCCTATTCTTTAGCTTTCCAAATTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

432

Amino Acids

49.43

Weight (kDa)

5.91

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1038
AasI GACNNNNNNGTC 1 cut(s) 728
AccB1I GGYRCC 1 cut(s) 931
AclWI GGATC 3 cut(s) 179, 192, 377
AcsI RAATTY 2 cut(s) 895, 911
AfaI GTAC 4 cut(s) 55, 273, 687, 705
AfiI CCNNNNNNNGG 1 cut(s) 823
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 9 cut(s) 103, 145, 245, 259, 287, 740, 863, 911, 1210
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 5 cut(s) 247, 401, 676, 1087, 1228
AluBI AGCT 7 cut(s) 32, 98, 120, 389, 1164, 1213, 1283
AluI AGCT 7 cut(s) 32, 98, 120, 389, 1164, 1213, 1283
Alw21I GWGCWC 2 cut(s) 815, 1166
Alw26I GTCTC 1 cut(s) 824
Alw44I GTGCAC 1 cut(s) 811
AlwI GGATC 3 cut(s) 179, 192, 377
AoxI GGCC 2 cut(s) 7, 16
ApaLI GTGCAC 1 cut(s) 811
ApeKI GCWGC 2 cut(s) 44, 117
ApoI RAATTY 2 cut(s) 895, 911
Asp700I GAANNNNTTC 1 cut(s) 601
AspS9I GGNCC 4 cut(s) 222, 292, 350, 663
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 2 cut(s) 523, 737
AvaII GGWCC 4 cut(s) 222, 292, 350, 663
AxyI CCTNAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 815
BamHI GGATCC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 931
BanII GRGCYC 1 cut(s) 1166
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 2 cut(s) 815, 1166
BbvI GCAGC 2 cut(s) 31, 129
BccI CCATC 2 cut(s) 330, 874
BceAI ACGGC 2 cut(s) 742, 945
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 5 cut(s) 249, 403, 678, 1089, 1230
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 1 cut(s) 824
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 4 cut(s) 396, 767, 846, 1056
BfmI CTRYAG 1 cut(s) 690
BglI GCCNNNNNGGC 2 cut(s) 15, 763
BisI GCNGC 2 cut(s) 45, 118
BlsI GCNGC 2 cut(s) 46, 119
Bme1390I CCNGG 6 cut(s) 249, 403, 678, 825, 1089, 1230
Bme18I GGWCC 4 cut(s) 222, 292, 350, 663
BmgT120I GGNCC 4 cut(s) 222, 292, 350, 663
BmiI GGNNCC 5 cut(s) 186, 224, 352, 450, 933
BmrFI CCNGG 6 cut(s) 249, 403, 678, 825, 1089, 1230
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 1110
Bpu10I CCTNAGC 1 cut(s) 1165
BpuMI CCSGG 1 cut(s) 825
BsaAI YACGTR 1 cut(s) 125
BsaBI GATNNNNATC 3 cut(s) 183, 774, 1140
BsaJI CCNNGG 3 cut(s) 758, 824, 1157
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse1I ACTGG 1 cut(s) 28
Bse21I CCTNAGG 1 cut(s) 356
Bse8I GATNNNNATC 3 cut(s) 183, 774, 1140
BseBI CCWGG 5 cut(s) 249, 403, 678, 1089, 1230
BseDI CCNNGG 3 cut(s) 758, 824, 1157
BseGI GGATG 1 cut(s) 1135
BseJI GATNNNNATC 3 cut(s) 183, 774, 1140
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMII CTCAG 4 cut(s) 347, 581, 1059, 1179
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 3 cut(s) 555, 607, 636
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 2 cut(s) 31, 129
BshFI GGCC 2 cut(s) 9, 18
BshNI GGYRCC 1 cut(s) 931
BsiHKAI GWGCWC 2 cut(s) 815, 1166
BsiSI CCGG 2 cut(s) 452, 824
BslFI GGGAC 3 cut(s) 208, 336, 556
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 1 cut(s) 824
BsmBI CGTCTC 1 cut(s) 824
BsmFI GGGAC 3 cut(s) 208, 336, 556
BsnI GGCC 2 cut(s) 9, 18
Bsp1286I GDGCHC 2 cut(s) 815, 1166
Bsp143I GATC 4 cut(s) 184, 382, 621, 1141
BspANI GGCC 2 cut(s) 9, 18
BspCNI CTCAG 4 cut(s) 348, 580, 1058, 1178
BspLI GGNNCC 5 cut(s) 186, 224, 352, 450, 933
BspPI GGATC 3 cut(s) 179, 192, 377
BspT107I GGYRCC 1 cut(s) 931
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 758, 824, 1157
BssMI GATC 4 cut(s) 184, 382, 621, 1141
BssT1I CCWWGG 1 cut(s) 1157
Bst2UI CCWGG 5 cut(s) 249, 403, 678, 1089, 1230
Bst4CI ACNGT 3 cut(s) 269, 703, 725
Bst6I CTCTTC 2 cut(s) 676, 789
BstAPI GCANNNNNTGC 1 cut(s) 44
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 5 cut(s) 356, 567, 900, 1045, 1165
BstDSI CCRYGG 1 cut(s) 758
BstF5I GGATG 1 cut(s) 1135
BstKTI GATC 4 cut(s) 187, 385, 624, 1144
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 4 cut(s) 184, 382, 621, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 15, 44, 763
BstNI CCWGG 5 cut(s) 249, 403, 678, 1089, 1230
BstNSI RCATGY 3 cut(s) 380, 634, 710
BstSCI CCNGG 6 cut(s) 247, 401, 676, 823, 1087, 1228
BstSFI CTRYAG 1 cut(s) 690
BstSLI GKGCMC 1 cut(s) 815
BstV1I GCAGC 2 cut(s) 31, 129
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 2 cut(s) 336, 1126
BstYI RGATCY 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 2 cut(s) 9, 18
BtgI CCRYGG 1 cut(s) 758
BtsCI GGATG 1 cut(s) 1135
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 2 cut(s) 21, 462
Cac8I GCNNGC 1 cut(s) 632
Cfr13I GGNCC 4 cut(s) 222, 292, 350, 663
CsiI ACCWGGT 1 cut(s) 247
Csp6I GTAC 4 cut(s) 54, 272, 686, 704
CviAII CATG 8 cut(s) 5, 39, 57, 176, 377, 631, 707, 1120
CviQI GTAC 4 cut(s) 54, 272, 686, 704
DdeI CTNAG 5 cut(s) 356, 567, 900, 1045, 1165
DpnI GATC 4 cut(s) 186, 384, 623, 1143
DpnII GATC 4 cut(s) 184, 382, 621, 1141
DrdI GACNNNNNNGTC 1 cut(s) 728
DseDI GACNNNNNNGTC 1 cut(s) 728
Eam1104I CTCTTC 2 cut(s) 676, 789
EarI CTCTTC 2 cut(s) 676, 789
Ecl136II GAGCTC 1 cut(s) 1164
Eco130I CCWWGG 1 cut(s) 1157
Eco147I AGGCCT 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 1166
Eco47I GGWCC 4 cut(s) 222, 292, 350, 663
Eco53kI GAGCTC 1 cut(s) 1164
Eco81I CCTNAGG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 1164
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 5 cut(s) 247, 401, 676, 1087, 1228
EcoT14I CCWWGG 1 cut(s) 1157
EcoT22I ATGCAT 2 cut(s) 6, 40
EcoT38I GRGCYC 1 cut(s) 1166
ErhI CCWWGG 1 cut(s) 1157
Esp3I CGTCTC 1 cut(s) 824
FaeI CATG 8 cut(s) 8, 42, 60, 179, 380, 634, 710, 1123
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 3 cut(s) 208, 336, 556
FatI CATG 8 cut(s) 4, 38, 56, 175, 376, 630, 706, 1119
Fnu4HI GCNGC 2 cut(s) 45, 118
FokI GGATG 1 cut(s) 1142
FriOI GRGCYC 1 cut(s) 1166
Fsp4HI GCNGC 2 cut(s) 45, 118
FspBI CTAG 4 cut(s) 396, 767, 846, 1056
GluI GCNGC 2 cut(s) 45, 118
GsuI CTGGAG 1 cut(s) 1110
HaeIII GGCC 2 cut(s) 9, 18
HapII CCGG 2 cut(s) 452, 824
Hin1II CATG 8 cut(s) 8, 42, 60, 179, 380, 634, 710, 1123
HindIII AAGCTT 1 cut(s) 1211
HinfI GANTC 1 cut(s) 1001
HpaII CCGG 2 cut(s) 452, 824
HphI GGTGA 2 cut(s) 523, 737
Hpy166II GTNNAC 5 cut(s) 272, 526, 663, 712, 813
Hpy188I TCNGA 2 cut(s) 393, 1048
Hpy188III TCNNGA 5 cut(s) 103, 287, 860, 1127, 1249
Hpy8I GTNNAC 5 cut(s) 272, 526, 663, 712, 813
HpyAV CCTTC 4 cut(s) 587, 612, 980, 1246
HpyCH4III ACNGT 3 cut(s) 269, 703, 725
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 9 cut(s) 4, 38, 47, 79, 474, 630, 813, 977, 1176
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 44, 763
HpyF3I CTNAG 5 cut(s) 356, 567, 900, 1045, 1165
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 8 cut(s) 8, 42, 60, 179, 380, 634, 710, 1123
Kzo9I GATC 4 cut(s) 184, 382, 621, 1141
LmnI GCTCC 3 cut(s) 454, 500, 1161
Lsp1109I GCAGC 2 cut(s) 31, 129
LweI GCATC 1 cut(s) 25
MabI ACCWGGT 1 cut(s) 247
MaeI CTAG 4 cut(s) 396, 767, 846, 1056
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 697, 877
MalI GATC 4 cut(s) 186, 384, 623, 1143
MboI GATC 4 cut(s) 184, 382, 621, 1141
MboII GAAGA 6 cut(s) 665, 693, 728, 731, 806, 1145
MfeI CAATTG 1 cut(s) 1171
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 815, 1166
MluCI AATT 6 cut(s) 82, 895, 911, 1039, 1171, 1290
MmeI TCCRAC 2 cut(s) 770, 1201
Mph1103I ATGCAT 2 cut(s) 6, 40
MroXI GAANNNNTTC 1 cut(s) 601
MslI CAYNNNNRTG 3 cut(s) 334, 415, 818
MspI CCGG 2 cut(s) 452, 824
MspR9I CCNGG 6 cut(s) 249, 403, 678, 825, 1089, 1230
MunI CAATTG 1 cut(s) 1171
MvaI CCWGG 5 cut(s) 249, 403, 678, 1089, 1230
MwoI GCNNNNNNNGC 3 cut(s) 15, 44, 763
NciI CCSGG 1 cut(s) 825
NdeII GATC 4 cut(s) 184, 382, 621, 1141
NlaIII CATG 8 cut(s) 8, 42, 60, 179, 380, 634, 710, 1123
NlaIV GGNNCC 5 cut(s) 186, 224, 352, 450, 933
NmuCI GTSAC 1 cut(s) 697
NsiI ATGCAT 2 cut(s) 6, 40
NspI RCATGY 3 cut(s) 380, 634, 710
PaeI GCATGC 1 cut(s) 634
PceI AGGCCT 1 cut(s) 18
PciI ACATGT 1 cut(s) 706
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 1001
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 2 cut(s) 46, 119
Ppu21I YACGTR 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 292
PscI ACATGT 1 cut(s) 706
PsiI TTATAA 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 1166
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 5 cut(s) 247, 401, 676, 1087, 1228
PspGI CCWGG 5 cut(s) 247, 401, 676, 1087, 1228
PspN4I GGNNCC 5 cut(s) 186, 224, 352, 450, 933
PspPI GGNCC 4 cut(s) 222, 292, 350, 663
PspPPI RGGWCCY 1 cut(s) 292
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 4 cut(s) 55, 273, 687, 705
RsaNI GTAC 4 cut(s) 54, 272, 686, 704
RseI CAYNNNNRTG 3 cut(s) 334, 415, 818
SacI GAGCTC 1 cut(s) 1166
SatI GCNGC 2 cut(s) 45, 118
Sau3AI GATC 4 cut(s) 184, 382, 621, 1141
Sau96I GGNCC 4 cut(s) 222, 292, 350, 663
ScrFI CCNGG 6 cut(s) 249, 403, 678, 825, 1089, 1230
SduI GDGCHC 2 cut(s) 815, 1166
SexAI ACCWGGT 1 cut(s) 247
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 690
SfiI GGCCNNNNNGGCC 1 cut(s) 15
SinI GGWCC 4 cut(s) 222, 292, 350, 663
SmiMI CAYNNNNRTG 3 cut(s) 334, 415, 818
SpeI ACTAGT 1 cut(s) 395
SphI GCATGC 1 cut(s) 634
Sse9I AATT 6 cut(s) 82, 895, 911, 1039, 1171, 1290
SseBI AGGCCT 1 cut(s) 18
SspI AATATT 2 cut(s) 736, 941
SspMI CTAG 4 cut(s) 396, 767, 846, 1056
SstI GAGCTC 1 cut(s) 1166
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 6 cut(s) 247, 401, 676, 823, 1087, 1228
StyI CCWWGG 1 cut(s) 1157
TaaI ACNGT 3 cut(s) 269, 703, 725
TaiI ACGT 1 cut(s) 127
TasI AATT 6 cut(s) 82, 895, 911, 1039, 1171, 1290
TatI WGTACW 1 cut(s) 703
TfiI GAWTC 1 cut(s) 1001
TscAI CASTG 2 cut(s) 28, 462
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 2 cut(s) 44, 117
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 9 cut(s) 147, 179, 549, 594, 807, 999, 1122, 1146, 1250
TspGWI ACGGA 2 cut(s) 177, 545
TspRI CASTG 2 cut(s) 28, 462
VneI GTGCAC 1 cut(s) 811
VpaK11BI GGWCC 4 cut(s) 222, 292, 350, 663
XapI RAATTY 2 cut(s) 895, 911
XceI RCATGY 3 cut(s) 380, 634, 710
XmnI GAANNNNTTC 1 cut(s) 601
XspI CTAG 4 cut(s) 396, 767, 846, 1056
Zsp2I ATGCAT 2 cut(s) 6, 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.