Rh7DG459000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000630
Physical Location & Seq
Reverse (-)
65292862 .. 65297729
4868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG459000.1

Sequence Viewer

Length: 944 bp
ATGGAGGTTTCCGAAGCCCCTTCCTTTCGGCCAAGAGATCGCCGGCCCGACGCCCTCGGAAACTTCCTAGTCCTCCCCGACGAGCCCATCTGTGCCGTCTTGGAGTTGCTCTCTCCTCGCGACGTTGCTCGCCTCTCCTGCGTTAGCAGTGTGATGTATATACTTTGCAATGAAGAGCCACTCTGGTTGAGTTTATGCCTCAACACACTGAATGGTCCGCTCCAGTACAAAGGATCATGGAAGAAGACGGTGCTGAATTTGGAGAATGTGTCGTATGAATGCGACGAGGCTGGCAGAAAACCACTGAGTTTTGATGGATTCAACTCTTTGTTCTTGCACAGAAGATTATACAGGTGTCATACCACATTACATGGCTTTTCTTTTGACAGTGGGAATGTGGAAAGAAAGGGCAAAAGCACAGTTTTGCTCACTGGATTAGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGAAGCTCACATAAAATCTCAATGACATTCAAGGATTATGTTTCATATATGAAAGTTCAGCATGATGAGGATCCGCTTTATATCTTTGATCACAAGTTTGGAGACGTTGAACCTGGCTTGTTCAAAGATTACAGTGTACCTTATCTATTTCAAGAGGACTTTTTTGATGTTTTGGACAAAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCAGAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACCAGTGCCTGGAATACACTTCTATGTCGTCGTAAAAGAGTACCTATAGGTGTCACAGTACATGTAAACGAAGAAGACGGTGATGTCAATATTGAAACTCCAACTTCGTTGCAGTGGTGGCTAGATTTTTATCCACTTCTTGCTGATGAAGACAAGCCCATAGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

314

Amino Acids

36.21

Weight (kDa)

5.74

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 23 - 67 3.6e-07 F-box-like
F-box PF00646 23 - 63 4.7e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 863
AccB7I CCANNNNNTGG 1 cut(s) 789
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 218, 596
AclWI GGATC 4 cut(s) 241, 587, 600, 764
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 5 cut(s) 227, 463, 660, 822, 840
AfiI CCNNNNNNNGG 1 cut(s) 789
AflIII ACRYGT 1 cut(s) 841
AgsI TTSAA 7 cut(s) 322, 511, 553, 632, 646, 674, 875
AjnI CCWGG 2 cut(s) 634, 788
AluBI AGCT 4 cut(s) 440, 506, 528, 776
AluI AGCT 4 cut(s) 440, 506, 528, 776
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 4 cut(s) 241, 587, 600, 764
AlwNI CAGNNNCTG 1 cut(s) 789
AoxI GGCC 3 cut(s) 29, 44, 449
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 3 cut(s) 45, 215, 737
AsuHPI GGTGA 1 cut(s) 872
AvaII GGWCC 2 cut(s) 215, 737
BamHI GGATCC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 3 cut(s) 251, 861, 936
BccI CCATC 3 cut(s) 95, 308, 717
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 636, 790
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 68, 902
BfmI CTRYAG 1 cut(s) 825
BglI GCCNNNNNGGC 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 636, 790
Bme18I GGWCC 2 cut(s) 215, 737
BmgT120I GGNCC 3 cut(s) 45, 215, 737
BmiI GGNNCC 2 cut(s) 594, 739
BmrFI CCNGG 2 cut(s) 636, 790
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 3 cut(s) 251, 861, 936
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 206
BsaBI GATNNNNATC 2 cut(s) 591, 909
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 789
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 223, 436, 783
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 2 cut(s) 591, 909
BseBI CCWGG 2 cut(s) 636, 790
BseDI CCNNGG 1 cut(s) 55
BseJI GATNNNNATC 2 cut(s) 591, 909
BseLI CCNNNNNNNGG 1 cut(s) 789
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 223, 436, 783
BseRI GAGGAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 31, 46, 451
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 789
BsmAI GTCTC 1 cut(s) 618
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 3 cut(s) 31, 46, 451
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 5 cut(s) 37, 233, 592, 610, 769
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 2 cut(s) 218, 596
BspANI GGCC 3 cut(s) 31, 46, 451
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 594, 739
BspPI GGATC 4 cut(s) 241, 587, 600, 764
BspQI GCTCTTC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 3 cut(s) 223, 436, 783
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 5 cut(s) 37, 233, 592, 610, 769
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 636, 790
Bst4CI ACNGT 6 cut(s) 250, 389, 421, 656, 838, 860
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 4 cut(s) 44, 130, 292, 453
BstDEI CTNAG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 5 cut(s) 40, 236, 595, 613, 772
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 5 cut(s) 37, 233, 592, 610, 769
BstMWI GCNNNNNNNGC 4 cut(s) 138, 452, 457, 898
BstNI CCWGG 2 cut(s) 636, 790
BstNSI RCATGY 2 cut(s) 767, 845
BstSCI CCNGG 2 cut(s) 634, 788
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 1 cut(s) 120
BstV2I GAAGAC 3 cut(s) 251, 861, 936
BstX2I RGATCY 1 cut(s) 592
BstXI CCANNNNNNTGG 2 cut(s) 723, 749
BstYI RGATCY 1 cut(s) 592
BsuRI GGCC 3 cut(s) 31, 46, 451
BtsI GCAGTG 2 cut(s) 154, 899
BtsIMutI CAGTG 8 cut(s) 154, 206, 302, 394, 429, 661, 790, 899
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 4 cut(s) 44, 130, 292, 453
CaiI CAGNNNCTG 1 cut(s) 789
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 45, 215, 737
CseI GACGC 1 cut(s) 59
Csp6I GTAC 5 cut(s) 226, 462, 659, 821, 839
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 7 cut(s) 237, 371, 447, 465, 584, 764, 842
CviQI GTAC 5 cut(s) 226, 462, 659, 821, 839
DdeI CTNAG 1 cut(s) 305
DpnI GATC 5 cut(s) 39, 235, 594, 612, 771
DpnII GATC 5 cut(s) 37, 233, 592, 610, 769
DrdI GACNNNNNNGTC 1 cut(s) 863
DseDI GACNNNNNNGTC 1 cut(s) 863
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 215, 737
EcoRII CCWGG 2 cut(s) 634, 788
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 7 cut(s) 240, 374, 450, 468, 587, 767, 845
FaqI GGGAC 1 cut(s) 723
FatI CATG 7 cut(s) 236, 370, 446, 464, 583, 763, 841
FbaI TGATCA 1 cut(s) 610
FriOI GRGCYC 1 cut(s) 87
FspBI CTAG 2 cut(s) 68, 902
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 3 cut(s) 31, 46, 451
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 7 cut(s) 240, 374, 450, 468, 587, 767, 845
HinfI GANTC 1 cut(s) 318
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 2 cut(s) 659, 847
Hpy188I TCNGA 3 cut(s) 13, 59, 780
Hpy188III TCNNGA 3 cut(s) 119, 511, 674
Hpy8I GTNNAC 2 cut(s) 659, 847
Hpy99I CGWCG 5 cut(s) 53, 83, 125, 287, 813
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 6 cut(s) 250, 389, 421, 656, 838, 860
HpyCH4IV ACGT 2 cut(s) 123, 627
HpyCH4V TGCA 6 cut(s) 168, 337, 446, 455, 487, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 452, 457, 898
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 2 cut(s) 123, 627
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 7 cut(s) 240, 374, 450, 468, 587, 767, 845
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 5 cut(s) 37, 233, 592, 610, 769
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 225
LweI GCATC 1 cut(s) 433
MaeI CTAG 2 cut(s) 68, 902
MaeII ACGT 2 cut(s) 123, 627
MaeIII GTNAC 1 cut(s) 832
MalI GATC 5 cut(s) 39, 235, 594, 612, 771
MbiI CCGCTC 1 cut(s) 220
MboI GATC 5 cut(s) 37, 233, 592, 610, 769
MboII GAAGA 7 cut(s) 185, 253, 256, 354, 863, 866, 941
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 256, 490
MmeI TCCRAC 1 cut(s) 905
Mph1103I ATGCAT 1 cut(s) 448
MroNI GCCGGC 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 721, 802
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 636, 790
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 2 cut(s) 636, 790
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 138, 452, 457, 898
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 5 cut(s) 37, 233, 592, 610, 769
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 7 cut(s) 240, 374, 450, 468, 587, 767, 845
NlaIV GGNNCC 2 cut(s) 594, 739
NmuCI GTSAC 1 cut(s) 832
NruI TCGCGA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 2 cut(s) 767, 845
PciI ACATGT 1 cut(s) 841
PciSI GCTCTTC 1 cut(s) 168
PctI GAATGC 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 318
PflMI CCANNNNNTGG 1 cut(s) 789
PscI ACATGT 1 cut(s) 841
Psp6I CCWGG 2 cut(s) 634, 788
PspGI CCWGG 2 cut(s) 634, 788
PspN4I GGNNCC 2 cut(s) 594, 739
PspPI GGNCC 3 cut(s) 45, 215, 737
PstNI CAGNNNCTG 1 cut(s) 789
PsuI RGATCY 1 cut(s) 592
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 5 cut(s) 227, 463, 660, 822, 840
RsaNI GTAC 5 cut(s) 226, 462, 659, 821, 839
RseI CAYNNNNRTG 2 cut(s) 721, 802
SapI GCTCTTC 1 cut(s) 168
Sau3AI GATC 5 cut(s) 37, 233, 592, 610, 769
Sau96I GGNCC 3 cut(s) 45, 215, 737
ScrFI CCNGG 2 cut(s) 636, 790
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 2 cut(s) 215, 737
SmiMI CAYNNNNRTG 2 cut(s) 721, 802
Sse9I AATT 2 cut(s) 256, 490
SsiI CCGC 2 cut(s) 218, 596
SspI AATATT 1 cut(s) 871
SspMI CTAG 2 cut(s) 68, 902
StyD4I CCNGG 2 cut(s) 634, 788
TaaI ACNGT 6 cut(s) 250, 389, 421, 656, 838, 860
TaiI ACGT 2 cut(s) 126, 630
TasI AATT 2 cut(s) 256, 490
TatI WGTACW 2 cut(s) 225, 838
TfiI GAWTC 1 cut(s) 318
TscAI CASTG 8 cut(s) 154, 213, 309, 394, 436, 661, 790, 899
TseFI GTSAC 1 cut(s) 832
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 5 cut(s) 186, 291, 555, 587, 942
TspRI CASTG 8 cut(s) 154, 213, 309, 394, 436, 661, 790, 899
Van91I CCANNNNNTGG 1 cut(s) 789
VpaK11BI GGWCC 2 cut(s) 215, 737
XapI RAATTY 1 cut(s) 256
XceI RCATGY 2 cut(s) 767, 845
XspI CTAG 2 cut(s) 68, 902
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.