Rh7AG473700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000630
Physical Location & Seq
Reverse (-)
65704225 .. 65708429
4205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG473700.1

Sequence Viewer

Length: 1092 bp
ATGCCGGGGGAGACGATTTTCGTTCCTAGTGTCCTAAATCTTGAACCATCTATTGCTGTTACCCAGAACTTTGTAAATTCTAAGAACTTTGAATTTGTGTGCTTGGATATGGCACCTAAATATTGTCATAAGGGAGTTTGCCGTGCTGGACTACTTGCAGATGATGAAGGCAGTATTGAGGATTCCACAAATCATATACTCTATGGCAAAGATGATTATAATTCCTCAGATATGACTAGGAAAGTAAAAAGAGTTAGAACTCTCAAACCTGGAGAATATCCAAGTAATGAAAGAACTCGTAATGGTGCTCAGCGTTTTTCTTATGATGGAGCACGTCTTGCACTAAATGCGAGCAAATGGTCAGAATCCATGGCAGAACTTGAGTTCTATAGTCTCCTAGGCAAAGTCAACTCCCCTCTGAAAAATCACATACCTGACGTTTTGGCAAGTGGGATCATTTATCTTGCAAATGGAACCTATAAAATTGTACCTTGGGATGGCAAAAGAGTTCCTGATGTGATTGCTAAGTGCAATTTTATTCCGGAGAAGGTCAAAGGAGATGTTTCTCCTTTTGGTGTATGGAGGAAGAAACAATTTGAATACAGAAAAGCTGGGGTCTCAACAAACGAATCCATCCGTTCAGCTGAATATACAAGGATATGGCCATATCTCATAACAAAACGATGCAAAGGAAAAATATATGCAGAGTTAAGAGATACTTTGTCACAGGAAGATGAACTGAACTTAGCTTCCTTCCTGGGAGAGCAGCTCCGTTACCTCCATCTCTTGCCCCATCCACCTCTTGATATCTCTATTTTCTCAGATATTGAACAGGAATCAGATTTTCCCTTTACCAACGGTGGTATGGAAGCTGTTCCCTATAAATCAAACATTCCTGCTGAATGGGATATATTCATTAGAACTCTATCCAAAAAGAAGAAGAATGTCTCAAGTCGCTTGATTAAATGGGGAGATCCAATTCCTAGCCCACTCATAGAGAAAGTTGGCAAATACATCCCAGATGATTTTGCCGAGTTTCTGTACATGTTTAAGCTGGGCCTATTCCACATTCCACCTTCAATGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

363

Amino Acids

41.28

Weight (kDa)

8.38

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 541
AclWI GGATC 2 cut(s) 461, 968
AcoI YGGCCR 1 cut(s) 662
AcsI RAATTY 2 cut(s) 76, 92
AfaI GTAC 2 cut(s) 489, 1043
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 2 cut(s) 1044, 1086
AgsI TTSAA 5 cut(s) 44, 92, 599, 830, 1080
AjiI CACGTC 1 cut(s) 335
AjnI CCWGG 2 cut(s) 268, 756
AloI GAACNNNNNNTCC 2 cut(s) 734, 766
AluBI AGCT 6 cut(s) 611, 644, 749, 769, 872, 1054
AluI AGCT 6 cut(s) 611, 644, 749, 769, 872, 1054
Alw21I GWGCWC 2 cut(s) 310, 334
Alw26I GTCTC 4 cut(s) 5, 398, 622, 952
AlwI GGATC 2 cut(s) 461, 968
Aor13HI TCCGGA 1 cut(s) 541
AoxI GGCC 2 cut(s) 662, 1057
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 2 cut(s) 76, 92
Asp700I GAANNNNTTC 1 cut(s) 873
AspA2I CCTAGG 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 1057
AsuC2I CCSGG 1 cut(s) 6
AvrII CCTAGG 1 cut(s) 397
BalI TGGCCA 1 cut(s) 664
BanI GGYRCC 1 cut(s) 112
Bbv12I GWGCWC 2 cut(s) 310, 334
BbvI GCAGC 1 cut(s) 778
BccI CCATC 6 cut(s) 55, 320, 491, 641, 789, 801
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 2 cut(s) 270, 758
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 4 cut(s) 5, 398, 622, 952
BfaI CTAG 4 cut(s) 27, 237, 398, 984
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 1 cut(s) 767
BlnI CCTAGG 1 cut(s) 397
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 768
Bme1390I CCNGG 3 cut(s) 6, 270, 758
BmgBI CACGTC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 1057
BmiI GGNNCC 2 cut(s) 114, 475
BmrFI CCNGG 3 cut(s) 6, 270, 758
BmsI GCATC 1 cut(s) 674
BplI GAGNNNNNCTC 2 cut(s) 753, 785
BpmI CTGGAG 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 401, 934
BpuMI CCSGG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 5 cut(s) 5, 369, 397, 491, 757
BsaWI WCCGGW 1 cut(s) 541
Bsc4I CCNNNNNNNGG 1 cut(s) 497
BseAI TCCGGA 1 cut(s) 541
BseBI CCWGG 2 cut(s) 270, 758
BseDI CCNNGG 5 cut(s) 5, 369, 397, 491, 757
BseGI GGATG 4 cut(s) 502, 633, 793, 1014
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 3 cut(s) 240, 323, 834
BseXI GCAGC 1 cut(s) 778
BseYI CCCAGC 2 cut(s) 611, 1054
BshFI GGCC 2 cut(s) 664, 1059
BshNI GGYRCC 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 310, 334
BsiSI CCGG 2 cut(s) 5, 542
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 4 cut(s) 5, 398, 622, 952
BsmBI CGTCTC 1 cut(s) 5
BsnI GGCC 2 cut(s) 664, 1059
Bso31I GGTCTC 1 cut(s) 622
Bsp1286I GDGCHC 2 cut(s) 310, 334
Bsp13I TCCGGA 1 cut(s) 541
Bsp1407I TGTACA 1 cut(s) 1041
Bsp143I GATC 2 cut(s) 453, 973
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 369
BspANI GGCC 2 cut(s) 664, 1059
BspCNI CTCAG 3 cut(s) 239, 322, 833
BspEI TCCGGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 114, 475
BspPI GGATC 2 cut(s) 461, 968
BspT107I GGYRCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 622
BsrGI TGTACA 1 cut(s) 1041
BssECI CCNNGG 5 cut(s) 5, 369, 397, 491, 757
BssMI GATC 2 cut(s) 453, 973
BssT1I CCWWGG 3 cut(s) 369, 397, 491
Bst2UI CCWGG 2 cut(s) 270, 758
Bst4CI ACNGT 1 cut(s) 860
BstAPI GCANNNNNTGC 2 cut(s) 338, 347
BstAUI TGTACA 1 cut(s) 1041
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 6 cut(s) 81, 226, 309, 525, 745, 820
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 4 cut(s) 502, 633, 793, 1014
BstKTI GATC 2 cut(s) 456, 976
BstMAI GTCTC 4 cut(s) 5, 398, 622, 952
BstMBI GATC 2 cut(s) 453, 973
BstMWI GCNNNNNNNGC 2 cut(s) 338, 347
BstNI CCWGG 2 cut(s) 270, 758
BstNSI RCATGY 2 cut(s) 1048, 1090
BstSCI CCNGG 3 cut(s) 4, 268, 756
BstSFI CTRYAG 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 778
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 2 cut(s) 664, 1059
BtgI CCRYGG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 335
BtsCI GGATG 4 cut(s) 502, 633, 793, 1014
Cac8I GCNNGC 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 1057
Csp6I GTAC 2 cut(s) 488, 1042
CviAII CATG 3 cut(s) 370, 1045, 1087
CviJI RGCY 9 cut(s) 611, 644, 664, 749, 769, 872, 987, 1054, 1059
CviKI_1 RGCY 9 cut(s) 611, 644, 664, 749, 769, 872, 987, 1054, 1059
CviQI GTAC 2 cut(s) 488, 1042
DdeI CTNAG 6 cut(s) 81, 226, 309, 525, 745, 820
DpnI GATC 2 cut(s) 455, 975
DpnII GATC 2 cut(s) 453, 973
EaeI YGGCCR 1 cut(s) 662
Eco130I CCWWGG 3 cut(s) 369, 397, 491
Eco31I GGTCTC 1 cut(s) 622
Eco32I GATATC 1 cut(s) 808
EcoRII CCWGG 2 cut(s) 268, 756
EcoRV GATATC 1 cut(s) 808
EcoT14I CCWWGG 3 cut(s) 369, 397, 491
ErhI CCWWGG 3 cut(s) 369, 397, 491
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 3 cut(s) 373, 1048, 1090
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FatI CATG 3 cut(s) 369, 1044, 1086
Fnu4HI GCNGC 1 cut(s) 767
FokI GGATG 4 cut(s) 509, 620, 780, 1001
Fsp4HI GCNGC 1 cut(s) 767
FspBI CTAG 4 cut(s) 27, 237, 398, 984
GluI GCNGC 1 cut(s) 767
GsaI CCCAGC 2 cut(s) 615, 1058
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 664, 1059
HapII CCGG 2 cut(s) 5, 542
Hin1II CATG 3 cut(s) 373, 1048, 1090
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 4 cut(s) 182, 365, 629, 836
HpaII CCGG 2 cut(s) 5, 542
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 5 cut(s) 229, 364, 420, 823, 841
Hpy188III TCNNGA 4 cut(s) 41, 512, 542, 803
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 4 cut(s) 161, 541, 763, 1086
HpyCH4III ACNGT 1 cut(s) 860
HpyCH4IV ACGT 2 cut(s) 334, 438
HpyCH4V TGCA 6 cut(s) 158, 341, 467, 531, 687, 704
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 347
HpyF3I CTNAG 6 cut(s) 81, 226, 309, 525, 745, 820
HpySE526I ACGT 2 cut(s) 334, 438
Hsp92II CATG 3 cut(s) 373, 1048, 1090
Kpn2I TCCGGA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 453, 973
LmnI GCTCC 2 cut(s) 329, 774
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 1 cut(s) 674
MaeI CTAG 4 cut(s) 27, 237, 398, 984
MaeII ACGT 2 cut(s) 334, 438
MaeIII GTNAC 3 cut(s) 58, 723, 773
MalI GATC 2 cut(s) 455, 975
MboI GATC 2 cut(s) 453, 973
MboII GAAGA 4 cut(s) 598, 743, 949, 952
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 2 cut(s) 310, 334
MlsI TGGCCA 1 cut(s) 664
MluCI AATT 7 cut(s) 76, 92, 220, 483, 532, 593, 978
MluNI TGGCCA 1 cut(s) 664
MnlI CCTC 6 cut(s) 172, 235, 426, 576, 788, 810
Mox20I TGGCCA 1 cut(s) 664
MroI TCCGGA 1 cut(s) 541
MroXI GAANNNNTTC 1 cut(s) 873
MscI TGGCCA 1 cut(s) 664
MseI TTAA 3 cut(s) 710, 963, 1050
Msp20I TGGCCA 1 cut(s) 664
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 2 cut(s) 5, 542
MspR9I CCNGG 3 cut(s) 6, 270, 758
MvaI CCWGG 2 cut(s) 270, 758
MwoI GCNNNNNNNGC 2 cut(s) 338, 347
NciI CCSGG 1 cut(s) 6
NcoI CCATGG 1 cut(s) 369
NdeII GATC 2 cut(s) 453, 973
NlaIII CATG 3 cut(s) 373, 1048, 1090
NlaIV GGNNCC 2 cut(s) 114, 475
NmeAIII GCCGAG 1 cut(s) 1057
NmuCI GTSAC 1 cut(s) 723
NspI RCATGY 2 cut(s) 1048, 1090
PciI ACATGT 2 cut(s) 1044, 1086
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 4 cut(s) 182, 365, 629, 836
PkrI GCNGC 1 cut(s) 768
PscI ACATGT 2 cut(s) 1044, 1086
PsiI TTATAA 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 268, 756
PspFI CCCAGC 2 cut(s) 611, 1054
PspGI CCWGG 2 cut(s) 268, 756
PspN4I GGNNCC 2 cut(s) 114, 475
PspPI GGNCC 1 cut(s) 1057
PsuI RGATCY 1 cut(s) 973
PvuII CAGCTG 1 cut(s) 644
RsaI GTAC 2 cut(s) 489, 1043
RsaNI GTAC 2 cut(s) 488, 1042
SaqAI TTAA 3 cut(s) 710, 963, 1050
SatI GCNGC 1 cut(s) 767
Sau3AI GATC 2 cut(s) 453, 973
Sau96I GGNCC 1 cut(s) 1057
ScrFI CCNGG 3 cut(s) 6, 270, 758
SduI GDGCHC 2 cut(s) 310, 334
SfaNI GCATC 1 cut(s) 674
SfcI CTRYAG 1 cut(s) 388
SmlI CTYRAG 2 cut(s) 380, 949
SmoI CTYRAG 2 cut(s) 380, 949
Sse9I AATT 7 cut(s) 76, 92, 220, 483, 532, 593, 978
SspI AATATT 1 cut(s) 122
SspMI CTAG 4 cut(s) 27, 237, 398, 984
StyD4I CCNGG 3 cut(s) 4, 268, 756
StyI CCWWGG 3 cut(s) 369, 397, 491
TaaI ACNGT 1 cut(s) 860
TaiI ACGT 2 cut(s) 337, 441
TasI AATT 7 cut(s) 76, 92, 220, 483, 532, 593, 978
TatI WGTACW 1 cut(s) 1041
TfiI GAWTC 4 cut(s) 182, 365, 629, 836
Tru1I TTAA 3 cut(s) 710, 963, 1050
Tru9I TTAA 3 cut(s) 710, 963, 1050
TseFI GTSAC 1 cut(s) 723
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 1 cut(s) 723
TspDTI ATGAA 4 cut(s) 180, 303, 750, 904
TspGWI ACGGA 2 cut(s) 626, 761
XapI RAATTY 2 cut(s) 76, 92
XceI RCATGY 2 cut(s) 1048, 1090
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XmaJI CCTAGG 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 4 cut(s) 27, 237, 398, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.