Rh7CG490800

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
66007761 .. 66015278
7518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG490800.1

Sequence Viewer

Length: 930 bp
ATGGAGGTTTCCGAAGCCCCTTCCTTTCGGCCAAGAGATCGCCGGCCCGACGCCCTCGGAAACTTCCTAGTCCTCCCCGACGAGCCCATCTGTGCCGTCTTGGAGTTGCTCTCTCCTCGCGACGTTGCTCGCCTCTCCTGCGTTAGCAGTGTGATGTATATACTTTGCAATGAAGAGCCACTCTGGTTGAGTTTATGCCTCAACACACTGAATGGTCCGCTCCAGTACAAAGGATCATGGAAGAAGACGGTGCTGAATTTGGAGAATGTGTCGTATGAATGCGACGAGGCTGGCAGAAAACCACTGAGTTTTGATGGATTCAACTCTTTGTTCTTGCACAGAAGATTATACAGGTGTCATACCACATTACATGGCTTTTCTTTTGACAGTGGGAATGTGGAAAGAAAGGGCAAAAGCACAGTTTTGCTCACTGGATTAGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGAAGCTCACATAAAATCTCAATGACATTCAAGGATTATGTTTCATATATGAAAGTTCAGCATGATGAGGATCCGCTTTATATCTTTGATCACAAGTTTGGAGACGTTGAACCTGGCTTGTTCAAAGATTACAGTGTACCTTATCTATTTCAAGAGGACTTTTTTGATGTTTTGGACAAAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCAGAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACCAGTGCCTGGAATACACTTCTATGTCGTCGTAAAAGGCAATTGCATAGGGCAACGAGAAATGAGAGAATGGTTATCCAAGCTTTGGGTCGGAAAACCAGGAATGAGAGACTTCATCTGGAAGAGCTTGATGAGTGTCGGGAGCATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

309

Amino Acids

35.98

Weight (kDa)

8.08

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 23 - 67 3.5e-07 F-box-like
F-box PF00646 23 - 63 4.6e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 789, 865
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 218, 596
AclWI GGATC 4 cut(s) 241, 587, 600, 764
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 227, 463, 660
AfiI CCNNNNNNNGG 2 cut(s) 789, 865
AgsI TTSAA 6 cut(s) 322, 511, 553, 632, 646, 674
AjnI CCWGG 3 cut(s) 634, 788, 878
AluBI AGCT 6 cut(s) 440, 506, 528, 776, 863, 907
AluI AGCT 6 cut(s) 440, 506, 528, 776, 863, 907
Alw26I GTCTC 2 cut(s) 618, 883
AlwI GGATC 4 cut(s) 241, 587, 600, 764
AlwNI CAGNNNCTG 1 cut(s) 789
AoxI GGCC 3 cut(s) 29, 44, 449
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 3 cut(s) 45, 215, 737
AvaII GGWCC 2 cut(s) 215, 737
BamHI GGATCC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 251
BccI CCATC 3 cut(s) 95, 308, 717
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 3 cut(s) 636, 790, 880
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 618, 883
BfaI CTAG 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 457
Bme1390I CCNGG 3 cut(s) 636, 790, 880
Bme18I GGWCC 2 cut(s) 215, 737
BmgT120I GGNCC 3 cut(s) 45, 215, 737
BmiI GGNNCC 2 cut(s) 594, 739
BmrFI CCNGG 3 cut(s) 636, 790, 880
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 789, 865
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 223, 436, 783
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 3 cut(s) 636, 790, 880
BseDI CCNNGG 1 cut(s) 55
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 2 cut(s) 789, 865
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 223, 436, 783
BseRI GAGGAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 31, 46, 451
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 2 cut(s) 789, 865
BsmAI GTCTC 2 cut(s) 618, 883
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 3 cut(s) 31, 46, 451
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 5 cut(s) 37, 233, 592, 610, 769
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 2 cut(s) 218, 596
BspANI GGCC 3 cut(s) 31, 46, 451
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 594, 739
BspPI GGATC 4 cut(s) 241, 587, 600, 764
BspQI GCTCTTC 2 cut(s) 168, 897
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 3 cut(s) 223, 436, 783
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 5 cut(s) 37, 233, 592, 610, 769
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 636, 790, 880
Bst4CI ACNGT 4 cut(s) 250, 389, 421, 656
Bst6I CTCTTC 2 cut(s) 168, 897
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 4 cut(s) 44, 130, 292, 453
BstDEI CTNAG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 5 cut(s) 40, 236, 595, 613, 772
BstMAI GTCTC 2 cut(s) 618, 883
BstMBI GATC 5 cut(s) 37, 233, 592, 610, 769
BstMWI GCNNNNNNNGC 3 cut(s) 138, 452, 457
BstNI CCWGG 3 cut(s) 636, 790, 880
BstNSI RCATGY 1 cut(s) 767
BstSCI CCNGG 3 cut(s) 634, 788, 878
BstUI CGCG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 592
BstXI CCANNNNNNTGG 2 cut(s) 723, 749
BstYI RGATCY 1 cut(s) 592
BsuRI GGCC 3 cut(s) 31, 46, 451
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 7 cut(s) 154, 206, 302, 394, 429, 661, 790
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 4 cut(s) 44, 130, 292, 453
CaiI CAGNNNCTG 1 cut(s) 789
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 45, 215, 737
CseI GACGC 1 cut(s) 59
Csp6I GTAC 3 cut(s) 226, 462, 659
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 6 cut(s) 237, 371, 447, 465, 584, 764
CviQI GTAC 3 cut(s) 226, 462, 659
DdeI CTNAG 1 cut(s) 305
DpnI GATC 5 cut(s) 39, 235, 594, 612, 771
DpnII GATC 5 cut(s) 37, 233, 592, 610, 769
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 168, 897
EarI CTCTTC 2 cut(s) 168, 897
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 215, 737
EcoRII CCWGG 3 cut(s) 634, 788, 878
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 6 cut(s) 240, 374, 450, 468, 587, 767
FaqI GGGAC 1 cut(s) 723
FatI CATG 6 cut(s) 236, 370, 446, 464, 583, 763
FbaI TGATCA 1 cut(s) 610
FriOI GRGCYC 1 cut(s) 87
FspBI CTAG 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 3 cut(s) 31, 46, 451
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 6 cut(s) 240, 374, 450, 468, 587, 767
HindIII AAGCTT 1 cut(s) 861
HinfI GANTC 1 cut(s) 318
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 659
Hpy188I TCNGA 4 cut(s) 13, 59, 780, 873
Hpy188III TCNNGA 5 cut(s) 119, 511, 674, 899, 920
Hpy8I GTNNAC 1 cut(s) 659
Hpy99I CGWCG 5 cut(s) 53, 83, 125, 287, 813
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 4 cut(s) 250, 389, 421, 656
HpyCH4IV ACGT 2 cut(s) 123, 627
HpyCH4V TGCA 6 cut(s) 168, 337, 446, 455, 487, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 452, 457
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 2 cut(s) 123, 627
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 6 cut(s) 240, 374, 450, 468, 587, 767
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 5 cut(s) 37, 233, 592, 610, 769
LguI GCTCTTC 2 cut(s) 168, 897
LmnI GCTCC 2 cut(s) 225, 922
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 68
MaeII ACGT 2 cut(s) 123, 627
MalI GATC 5 cut(s) 39, 235, 594, 612, 771
MbiI CCGCTC 1 cut(s) 220
MboI GATC 5 cut(s) 37, 233, 592, 610, 769
MboII GAAGA 5 cut(s) 185, 253, 256, 354, 914
MfeI CAATTG 1 cut(s) 821
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 3 cut(s) 256, 490, 821
MmeI TCCRAC 1 cut(s) 851
Mph1103I ATGCAT 1 cut(s) 448
MroNI GCCGGC 1 cut(s) 42
MseI TTAA 1 cut(s) 928
MslI CAYNNNNRTG 2 cut(s) 721, 802
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 3 cut(s) 636, 790, 880
MunI CAATTG 1 cut(s) 821
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 3 cut(s) 636, 790, 880
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 138, 452, 457
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 5 cut(s) 37, 233, 592, 610, 769
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 6 cut(s) 240, 374, 450, 468, 587, 767
NlaIV GGNNCC 2 cut(s) 594, 739
NruI TCGCGA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 1 cut(s) 767
PciSI GCTCTTC 2 cut(s) 168, 897
PctI GAATGC 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 318
PflMI CCANNNNNTGG 2 cut(s) 789, 865
Psp6I CCWGG 3 cut(s) 634, 788, 878
PspGI CCWGG 3 cut(s) 634, 788, 878
PspN4I GGNNCC 2 cut(s) 594, 739
PspPI GGNCC 3 cut(s) 45, 215, 737
PstNI CAGNNNCTG 1 cut(s) 789
PsuI RGATCY 1 cut(s) 592
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 3 cut(s) 227, 463, 660
RsaNI GTAC 3 cut(s) 226, 462, 659
RseI CAYNNNNRTG 2 cut(s) 721, 802
SapI GCTCTTC 2 cut(s) 168, 897
SaqAI TTAA 1 cut(s) 928
Sau3AI GATC 5 cut(s) 37, 233, 592, 610, 769
Sau96I GGNCC 3 cut(s) 45, 215, 737
ScrFI CCNGG 3 cut(s) 636, 790, 880
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 1 cut(s) 433
SinI GGWCC 2 cut(s) 215, 737
SmiMI CAYNNNNRTG 2 cut(s) 721, 802
Sse9I AATT 3 cut(s) 256, 490, 821
SsiI CCGC 2 cut(s) 218, 596
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 3 cut(s) 634, 788, 878
TaaI ACNGT 4 cut(s) 250, 389, 421, 656
TaiI ACGT 2 cut(s) 126, 630
TasI AATT 3 cut(s) 256, 490, 821
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 928
Tru9I TTAA 1 cut(s) 928
TscAI CASTG 7 cut(s) 154, 213, 309, 394, 436, 661, 790
TspDTI ATGAA 5 cut(s) 186, 291, 555, 587, 884
TspRI CASTG 7 cut(s) 154, 213, 309, 394, 436, 661, 790
Van91I CCANNNNNTGG 2 cut(s) 789, 865
VpaK11BI GGWCC 2 cut(s) 215, 737
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 767
XspI CTAG 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.