Rmu_sc0006141.1_g000004

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006141.1
OG0000630
Physical Location & Seq
Forward (+)
22991 .. 24857
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006141.1_g000004.1.cds

Sequence Viewer

Length: 681 bp
atggaggtccggccaagagatcgccggcccgacgccctcggaaacttcctagtcctccccgacgagcttatctgcgccgtcttgattctctctgtggattttgaattttcggatataaaatttgaaatgtttgctggattcgactctttgttcttgtacagaagattatacaggtgtcataccacattagatggcttttcttttgacagtgggaatgtggaaagaaagggcaaaatcacagtggaagagttttcttgtgactatgatgggaagaaaccggttttgctcactggattagctgatgcatgggctgcaaggcgtacatggacactagaccacttattgcagaattatggagatacagctttcaagatttctcaaagcagctcacgtaaaatctcaatgacattcaaggattatgtttcatatatgaaagttcagcatgatgaggatccgctttatatctttgatcacaagtttggagaggttgaacctggcttgttgaaagattacagtgtaccttatctatttcaagaggacttttttgatgttttggacaaagataagcgacctccatttagatggctcattattggtccccagaggtctggtgcttcttggcatgttgatccagctctgaccagtgcctggaatacgcttctatgtggtcgtaaaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

226

Amino Acids

26.28

Weight (kDa)

5.76

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 648
AciI CCGC 1 cut(s) 455
AclWI GGATC 3 cut(s) 446, 459, 623
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 2 cut(s) 104, 119
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 3 cut(s) 158, 322, 519
AfiI CCNNNNNNNGG 1 cut(s) 648
AgeI ACCGGT 1 cut(s) 277
AgsI TTSAA 7 cut(s) 104, 125, 370, 412, 491, 505, 533
AjnI CCWGG 2 cut(s) 493, 647
AluBI AGCT 5 cut(s) 67, 299, 365, 387, 635
AluI AGCT 5 cut(s) 67, 299, 365, 387, 635
AlwI GGATC 3 cut(s) 446, 459, 623
AlwNI CAGNNNCTG 1 cut(s) 648
AoxI GGCC 2 cut(s) 11, 26
ApeKI GCWGC 2 cut(s) 311, 384
ApoI RAATTY 2 cut(s) 104, 119
AsiGI ACCGGT 1 cut(s) 277
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 3 cut(s) 7, 27, 596
AvaII GGWCC 2 cut(s) 7, 596
BamHI GGATCC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 298, 396
BccI CCATC 3 cut(s) 185, 260, 576
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 495, 649
BclI TGATCA 1 cut(s) 469
BfaI CTAG 2 cut(s) 50, 332
BisI GCNGC 2 cut(s) 312, 385
BlsI GCNGC 2 cut(s) 313, 386
Bme1390I CCNGG 2 cut(s) 495, 649
Bme18I GGWCC 2 cut(s) 7, 596
BmgT120I GGNCC 3 cut(s) 7, 27, 596
BmiI GGNNCC 2 cut(s) 453, 598
BmrFI CCNGG 2 cut(s) 495, 649
BmsI GCATC 1 cut(s) 292
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 648
Bse118I RCCGGY 2 cut(s) 24, 277
Bse1I ACTGG 2 cut(s) 295, 642
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 2 cut(s) 495, 649
BseDI CCNNGG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 648
BseNI ACTGG 2 cut(s) 295, 642
BseXI GCAGC 2 cut(s) 298, 396
BshFI GGCC 2 cut(s) 13, 28
BshTI ACCGGT 1 cut(s) 277
BsiSI CCGG 3 cut(s) 10, 25, 278
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 648
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 2 cut(s) 13, 28
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 4 cut(s) 19, 451, 469, 628
BspACI CCGC 1 cut(s) 455
BspANI GGCC 2 cut(s) 13, 28
BspLI GGNNCC 2 cut(s) 453, 598
BspPI GGATC 3 cut(s) 446, 459, 623
BsrFI RCCGGY 2 cut(s) 24, 277
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 2 cut(s) 295, 642
BssAI RCCGGY 2 cut(s) 24, 277
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 4 cut(s) 19, 451, 469, 628
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 495, 649
Bst4CI ACNGT 3 cut(s) 209, 241, 515
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 26
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 22, 454, 472, 631
BstMBI GATC 4 cut(s) 19, 451, 469, 628
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 495, 649
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 493, 647
BstV1I GCAGC 2 cut(s) 298, 396
BstX2I RGATCY 1 cut(s) 451
BstXI CCANNNNNNTGG 2 cut(s) 582, 608
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 2 cut(s) 13, 28
BtsIMutI CAGTG 5 cut(s) 214, 246, 288, 520, 649
Cac8I GCNNGC 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 648
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 2 cut(s) 24, 277
Cfr13I GGNCC 3 cut(s) 7, 27, 596
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 157, 321, 518
CspAI ACCGGT 1 cut(s) 277
CviAII CATG 4 cut(s) 306, 324, 443, 623
CviQI GTAC 3 cut(s) 157, 321, 518
DpnI GATC 4 cut(s) 21, 453, 471, 630
DpnII GATC 4 cut(s) 19, 451, 469, 628
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 7, 596
EcoRII CCWGG 2 cut(s) 493, 647
EcoT22I ATGCAT 1 cut(s) 307
FaeI CATG 4 cut(s) 309, 327, 446, 626
FaqI GGGAC 1 cut(s) 582
FatI CATG 4 cut(s) 305, 323, 442, 622
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 2 cut(s) 312, 385
Fsp4HI GCNGC 2 cut(s) 312, 385
FspBI CTAG 2 cut(s) 50, 332
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 312, 385
HaeIII GGCC 2 cut(s) 13, 28
HapII CCGG 3 cut(s) 10, 25, 278
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 4 cut(s) 309, 327, 446, 626
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 3 cut(s) 85, 138, 143
HpaII CCGG 3 cut(s) 10, 25, 278
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 3 cut(s) 41, 112, 639
Hpy188III TCNNGA 3 cut(s) 82, 370, 533
Hpy8I GTNNAC 1 cut(s) 518
Hpy99I CGWCG 2 cut(s) 35, 65
HpyCH4III ACNGT 3 cut(s) 209, 241, 515
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 3 cut(s) 305, 314, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 391
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 4 cut(s) 309, 327, 446, 626
HspAI GCGC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 4 cut(s) 19, 451, 469, 628
Lsp1109I GCAGC 2 cut(s) 298, 396
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 50, 332
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 257
MalI GATC 4 cut(s) 21, 453, 471, 630
MboI GATC 4 cut(s) 19, 451, 469, 628
MboII GAAGA 3 cut(s) 174, 257, 283
MflI RGATCY 1 cut(s) 451
MluCI AATT 3 cut(s) 104, 119, 349
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 7 cut(s) 47, 65, 442, 478, 529, 582, 597
Mph1103I ATGCAT 1 cut(s) 307
MroNI GCCGGC 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 580
MspI CCGG 3 cut(s) 10, 25, 278
MspR9I CCNGG 2 cut(s) 495, 649
MvaI CCWGG 2 cut(s) 495, 649
MwoI GCNNNNNNNGC 1 cut(s) 311
NaeI GCCGGC 1 cut(s) 26
NdeII GATC 4 cut(s) 19, 451, 469, 628
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 4 cut(s) 309, 327, 446, 626
NlaIV GGNNCC 2 cut(s) 453, 598
NmuCI GTSAC 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 1 cut(s) 626
PdiI GCCGGC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 85, 138
PflMI CCANNNNNTGG 1 cut(s) 648
PinAI ACCGGT 1 cut(s) 277
PkrI GCNGC 2 cut(s) 313, 386
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 493, 647
PspGI CCWGG 2 cut(s) 493, 647
PspN4I GGNNCC 2 cut(s) 453, 598
PspPI GGNCC 3 cut(s) 7, 27, 596
PstNI CAGNNNCTG 1 cut(s) 648
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 3 cut(s) 158, 322, 519
RsaNI GTAC 3 cut(s) 157, 321, 518
RseI CAYNNNNRTG 1 cut(s) 580
SatI GCNGC 2 cut(s) 312, 385
Sau3AI GATC 4 cut(s) 19, 451, 469, 628
Sau96I GGNCC 3 cut(s) 7, 27, 596
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 495, 649
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 2 cut(s) 7, 596
SmiMI CAYNNNNRTG 1 cut(s) 580
Sse9I AATT 3 cut(s) 104, 119, 349
SsiI CCGC 1 cut(s) 455
SspMI CTAG 2 cut(s) 50, 332
StyD4I CCNGG 2 cut(s) 493, 647
TaaI ACNGT 3 cut(s) 209, 241, 515
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 104, 119, 349
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 2 cut(s) 85, 138
TscAI CASTG 5 cut(s) 214, 246, 295, 520, 649
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 311, 384
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 414, 446
TspRI CASTG 5 cut(s) 214, 246, 295, 520, 649
Van91I CCANNNNNTGG 1 cut(s) 648
VpaK11BI GGWCC 2 cut(s) 7, 596
XapI RAATTY 2 cut(s) 104, 119
XceI RCATGY 1 cut(s) 626
XspI CTAG 2 cut(s) 50, 332
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.