Rh7BG444500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000630
Physical Location & Seq
Reverse (-)
51751959 .. 51757057
5099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG444500.1

Sequence Viewer

Length: 429 bp
ATGCGACCGCCTAAAGCAGCAAAGTCCAAGAAGGCTGTGGCATCAAAGAAATCGTCATCTGGTACCGCCAAAACTGCCAAGAAGAAGTTAGATTTAGGGGAGGACCAGCAGAAAGTAGTTGAGGAGGATGAAATTTTTGTGGATGGGGAGCTGAACATCAAACTAACCTCGATTATTGAGGAGGAGGTTAGGAATGATTTAACTCCGAAAAAAAATGCAATTTTGGAGCAAGTGCAAGTGCCGTTCAGGTCAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTTCCCAGAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACCAGTGCCTGGAATACACTTCTATGTGGTCGTAAAAGGTGGGCCTTGTATCCTCCAGGAAGAGTACCTATATGTGTCACAGTACATGTATTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

142

Amino Acids

15.92

Weight (kDa)

9.76

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 339
AciI CCGC 2 cut(s) 8, 66
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 132
AfaI GTAC 3 cut(s) 64, 396, 414
AfiI CCNNNNNNNGG 1 cut(s) 339
AflIII ACRYGT 1 cut(s) 415
AjnI CCWGG 2 cut(s) 338, 385
AluBI AGCT 2 cut(s) 151, 326
AluI AGCT 2 cut(s) 151, 326
AlwI GGATC 1 cut(s) 314
AlwNI CAGNNNCTG 1 cut(s) 339
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
Asp718I GGTACC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 103, 372
AvaII GGWCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 137, 267
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 2 cut(s) 340, 387
BciVI GTATCC 1 cut(s) 390
BfuI GTATCC 1 cut(s) 390
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 340, 387
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 372
BmiI GGNNCC 2 cut(s) 64, 289
BmrFI CCNGG 2 cut(s) 340, 387
BmsI GCATC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 333
BseBI CCWGG 2 cut(s) 340, 387
BseGI GGATG 2 cut(s) 133, 148
BseLI CCNNNNNNNGG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 3 cut(s) 137, 194, 197
BseXI GCAGC 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 339
BsnI GGCC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 2 cut(s) 8, 66
BspANI GGCC 1 cut(s) 374
BspLI GGNNCC 2 cut(s) 64, 289
BspPI GGATC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 333
BssMI GATC 1 cut(s) 319
Bst2UI CCWGG 2 cut(s) 340, 387
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 385
BstF5I GGATG 2 cut(s) 133, 148
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 2 cut(s) 340, 387
BstNSI RCATGY 2 cut(s) 317, 419
BstSCI CCNGG 2 cut(s) 338, 385
BstV1I GCAGC 1 cut(s) 29
BstXI CCANNNNNNTGG 2 cut(s) 273, 299
BsuI GTATCC 1 cut(s) 390
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 2 cut(s) 133, 148
BtsIMutI CAGTG 1 cut(s) 340
CaiI CAGNNNCTG 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 103, 372
Csp6I GTAC 3 cut(s) 63, 395, 413
CviAII CATG 2 cut(s) 314, 416
CviJI RGCY 5 cut(s) 35, 151, 277, 326, 374
CviKI_1 RGCY 5 cut(s) 35, 151, 277, 326, 374
CviQI GTAC 3 cut(s) 63, 395, 413
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 338, 385
FaeI CATG 2 cut(s) 317, 419
FaiI YATR 5 cut(s) 315, 355, 401, 403, 417
FatI CATG 2 cut(s) 313, 415
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 2 cut(s) 140, 155
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 374
Hin1II CATG 2 cut(s) 317, 419
Hpy188I TCNGA 3 cut(s) 207, 253, 330
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 2 cut(s) 218, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Hsp92II CATG 2 cut(s) 317, 419
KpnI GGTACC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 2 cut(s) 148, 226
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 406
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 2 cut(s) 94, 402
MluCI AATT 2 cut(s) 132, 219
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 271, 352
MspR9I CCNGG 2 cut(s) 340, 387
MvaI CCWGG 2 cut(s) 340, 387
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 1 cut(s) 319
NlaIII CATG 2 cut(s) 317, 419
NlaIV GGNNCC 2 cut(s) 64, 289
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 2 cut(s) 317, 419
PciI ACATGT 1 cut(s) 415
PflMI CCANNNNNTGG 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 1 cut(s) 19
PscI ACATGT 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 338, 385
PspGI CCWGG 2 cut(s) 338, 385
PspN4I GGNNCC 2 cut(s) 64, 289
PspPI GGNCC 2 cut(s) 103, 372
PstNI CAGNNNCTG 1 cut(s) 339
RsaI GTAC 3 cut(s) 64, 396, 414
RsaNI GTAC 3 cut(s) 63, 395, 413
RseI CAYNNNNRTG 2 cut(s) 271, 352
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 2 cut(s) 103, 372
ScrFI CCNGG 2 cut(s) 340, 387
SetI ASST 9 cut(s) 153, 170, 189, 251, 265, 299, 328, 371, 400
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 271, 352
Sse9I AATT 2 cut(s) 132, 219
SsiI CCGC 2 cut(s) 8, 66
StyD4I CCNGG 2 cut(s) 338, 385
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 170
TasI AATT 2 cut(s) 132, 219
TatI WGTACW 1 cut(s) 412
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 132
XceI RCATGY 2 cut(s) 317, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.