Rh7AG474000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000630
Physical Location & Seq
Reverse (-)
65739530 .. 65742323
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG474000.1

Sequence Viewer

Length: 900 bp
ATGGAGGTTTCCGAAGCCCCTTCCTTCCGGCCAAGAGATCGCAGCCCGGACGCCCTCGGAAACTTCCTAGTCCTCCCCGACGAGCTCATCTGTGTCGTCTTGGAGTTGCTCTCTCCTCGCGACGTTAGCAGGGAGAATGTGTCGTATGAACTCAACGAGGCTTGCAGAAAACCACTGAGTTTTGATGGATTCGACTCTTTGTTCTTGTACAGAAGATTATACAGGTGTCGTACCACATTGGATGGTTTTTCTTTTGACAATGGGAATGTGGAAAGAAAGGACAAGATCACAGTGGAAGAGTTTTCTTGTGATTATGATGGGAAGAAACCGGTTTTGCTCAATGGATTAGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGGAGCTCACGTAAAATCTCAATGACATTCAAGGATTATGTTTCATATATGAAGGTTCAGCATGATGAGGATCCGCTTTATATCTTTGATCACAAGTTTGGAGAGGTTGAACCTGGCTTGTTGAAAGATTACAGTGTACCTTATCGATTTCAAGAGGACTTTTTTGATGTTTTGGACAAAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCAGAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACCAGTGCCTGGAATACACTTCTATGTGGTCGTAAAAGGTGGGCCTTGTATCCTCCAGGAAGAGTACCTATAGGTGTCACGGTACATGTAAACGAAGAAGACGGTGATGTCAATATTGAAACTCCAACTTCGTTGCAGTGGTGGCTAGATTTTTATCCACTTCTTGCTGATGAAGACAAGCCCATAGAGTGCACCCAAATGCCGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

299

Amino Acids

34.68

Weight (kDa)

5.05

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 107 - 294 9.1e-09 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 699
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 506
AclWI GGATC 3 cut(s) 497, 510, 674
AcoI YGGCCR 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 6 cut(s) 209, 232, 373, 570, 756, 774
AfiI CCNNNNNNNGG 2 cut(s) 699, 892
AflIII ACRYGT 1 cut(s) 775
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 6 cut(s) 421, 463, 542, 556, 584, 809
AjnI CCWGG 3 cut(s) 544, 698, 745
AluBI AGCT 5 cut(s) 85, 350, 416, 438, 686
AluI AGCT 5 cut(s) 85, 350, 416, 438, 686
Alw21I GWGCWC 3 cut(s) 87, 440, 884
Alw44I GTGCAC 1 cut(s) 880
AlwI GGATC 3 cut(s) 497, 510, 674
AlwNI CAGNNNCTG 1 cut(s) 699
AoxI GGCC 3 cut(s) 29, 359, 732
ApaLI GTGCAC 1 cut(s) 880
ApeKI GCWGC 1 cut(s) 42
AsiGI ACCGGT 1 cut(s) 328
AspS9I GGNCC 2 cut(s) 647, 732
AsuC2I CCSGG 2 cut(s) 47, 894
AsuHPI GGTGA 1 cut(s) 806
AvaII GGWCC 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 884
BamHI GGATCC 1 cut(s) 502
BanII GRGCYC 2 cut(s) 87, 440
BbsI GAAGAC 2 cut(s) 795, 870
Bbv12I GWGCWC 3 cut(s) 87, 440, 884
BbvI GCAGC 1 cut(s) 54
BccI CCATC 4 cut(s) 179, 236, 311, 627
BciT130I CCWGG 3 cut(s) 546, 700, 747
BciVI GTATCC 1 cut(s) 750
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 2 cut(s) 47, 894
BfaI CTAG 2 cut(s) 68, 836
BfmI CTRYAG 1 cut(s) 759
BfuI GTATCC 1 cut(s) 750
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 5 cut(s) 47, 546, 700, 747, 894
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 2 cut(s) 647, 732
BmiI GGNNCC 2 cut(s) 504, 649
BmrFI CCNGG 5 cut(s) 47, 546, 700, 747, 894
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 2 cut(s) 795, 870
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 729
BpuMI CCSGG 2 cut(s) 47, 894
Bsa29I ATCGAT 1 cut(s) 577
BsaAI YACGTR 1 cut(s) 443
BsaBI GATNNNNATC 2 cut(s) 501, 843
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 55, 893
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 699, 892
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 693
Bse8I GATNNNNATC 2 cut(s) 501, 843
BseBI CCWGG 3 cut(s) 546, 700, 747
BseCI ATCGAT 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 55, 893
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 2 cut(s) 501, 843
BseLI CCNNNNNNNGG 2 cut(s) 699, 892
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 884
BseXI GCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 31, 361, 734
BshTI ACCGGT 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 577
BsiHKAI GWGCWC 3 cut(s) 87, 440, 884
BsiSI CCGG 4 cut(s) 28, 47, 329, 893
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 699, 892
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 3 cut(s) 31, 361, 734
Bsp1286I GDGCHC 3 cut(s) 87, 440, 884
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 5 cut(s) 37, 285, 502, 520, 679
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 1 cut(s) 506
BspANI GGCC 3 cut(s) 31, 361, 734
BspCNI CTCAG 1 cut(s) 168
BspDI ATCGAT 1 cut(s) 577
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 504, 649
BspPI GGATC 3 cut(s) 497, 510, 674
BsrFI RCCGGY 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 55, 893
BssMI GATC 5 cut(s) 37, 285, 502, 520, 679
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 546, 700, 747
Bst4CI ACNGT 4 cut(s) 292, 566, 772, 794
Bst6I CTCTTC 2 cut(s) 291, 745
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 207
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 163, 363
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 5 cut(s) 40, 288, 505, 523, 682
BstMBI GATC 5 cut(s) 37, 285, 502, 520, 679
BstMWI GCNNNNNNNGC 4 cut(s) 126, 362, 367, 832
BstNI CCWGG 3 cut(s) 546, 700, 747
BstNSI RCATGY 2 cut(s) 677, 779
BstSCI CCNGG 5 cut(s) 45, 544, 698, 745, 892
BstSFI CTRYAG 1 cut(s) 759
BstSLI GKGCMC 1 cut(s) 884
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 2 cut(s) 795, 870
BstX2I RGATCY 1 cut(s) 502
BstXI CCANNNNNNTGG 2 cut(s) 633, 659
BstYI RGATCY 1 cut(s) 502
Bsu15I ATCGAT 1 cut(s) 577
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 3 cut(s) 31, 361, 734
BsuTUI ATCGAT 1 cut(s) 577
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 833
BtsIMutI CAGTG 5 cut(s) 173, 297, 571, 700, 833
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 163, 363
CaiI CAGNNNCTG 1 cut(s) 699
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 647, 732
ClaI ATCGAT 1 cut(s) 577
CseI GACGC 1 cut(s) 59
Csp6I GTAC 6 cut(s) 208, 231, 372, 569, 755, 773
CspAI ACCGGT 1 cut(s) 328
CviAII CATG 5 cut(s) 357, 375, 494, 674, 776
CviQI GTAC 6 cut(s) 208, 231, 372, 569, 755, 773
DdeI CTNAG 1 cut(s) 176
DpnI GATC 5 cut(s) 39, 287, 504, 522, 681
DpnII GATC 5 cut(s) 37, 285, 502, 520, 679
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 291, 745
EarI CTCTTC 2 cut(s) 291, 745
Ecl136II GAGCTC 2 cut(s) 85, 438
Eco24I GRGCYC 2 cut(s) 87, 440
Eco47I GGWCC 1 cut(s) 647
Eco53kI GAGCTC 2 cut(s) 85, 438
EcoICRI GAGCTC 2 cut(s) 85, 438
EcoRII CCWGG 3 cut(s) 544, 698, 745
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 2 cut(s) 87, 440
FaeI CATG 5 cut(s) 360, 378, 497, 677, 779
FaqI GGGAC 1 cut(s) 633
FatI CATG 5 cut(s) 356, 374, 493, 673, 775
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 2 cut(s) 87, 440
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 2 cut(s) 68, 836
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 3 cut(s) 31, 361, 734
HapII CCGG 4 cut(s) 28, 47, 329, 893
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 360, 378, 497, 677, 779
HinfI GANTC 2 cut(s) 189, 194
HpaII CCGG 4 cut(s) 28, 47, 329, 893
HphI GGTGA 1 cut(s) 806
Hpy166II GTNNAC 3 cut(s) 569, 781, 882
Hpy188I TCNGA 3 cut(s) 13, 59, 690
Hpy188III TCNNGA 3 cut(s) 119, 421, 584
Hpy8I GTNNAC 3 cut(s) 569, 781, 882
Hpy99I CGWCG 2 cut(s) 83, 125
HpyAV CCTTC 3 cut(s) 30, 34, 478
HpyCH4III ACNGT 4 cut(s) 292, 566, 772, 794
HpyCH4IV ACGT 2 cut(s) 123, 442
HpyCH4V TGCA 6 cut(s) 165, 356, 365, 397, 826, 882
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 362, 367, 832
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 2 cut(s) 123, 442
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 360, 378, 497, 677, 779
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 37, 285, 502, 520, 679
LmnI GCTCC 1 cut(s) 435
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 68, 836
MaeII ACGT 2 cut(s) 123, 442
MaeIII GTNAC 1 cut(s) 766
MalI GATC 5 cut(s) 39, 287, 504, 522, 681
MboI GATC 5 cut(s) 37, 285, 502, 520, 679
MboII GAAGA 7 cut(s) 225, 308, 334, 762, 797, 800, 875
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 3 cut(s) 87, 440, 884
MluCI AATT 1 cut(s) 400
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 839
Mph1103I ATGCAT 1 cut(s) 358
MslI CAYNNNNRTG 3 cut(s) 631, 712, 887
MspI CCGG 4 cut(s) 28, 47, 329, 893
MspR9I CCNGG 5 cut(s) 47, 546, 700, 747, 894
MvaI CCWGG 3 cut(s) 546, 700, 747
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 126, 362, 367, 832
NciI CCSGG 2 cut(s) 47, 894
NdeII GATC 5 cut(s) 37, 285, 502, 520, 679
NlaIII CATG 5 cut(s) 360, 378, 497, 677, 779
NlaIV GGNNCC 2 cut(s) 504, 649
NmuCI GTSAC 1 cut(s) 766
NruI TCGCGA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 2 cut(s) 677, 779
PciI ACATGT 1 cut(s) 775
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 699
PfoI TCCNGGA 1 cut(s) 745
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 443
PscI ACATGT 1 cut(s) 775
Psp124BI GAGCTC 2 cut(s) 87, 440
Psp6I CCWGG 3 cut(s) 544, 698, 745
PspGI CCWGG 3 cut(s) 544, 698, 745
PspN4I GGNNCC 2 cut(s) 504, 649
PspPI GGNCC 2 cut(s) 647, 732
PstNI CAGNNNCTG 1 cut(s) 699
PsuI RGATCY 1 cut(s) 502
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 6 cut(s) 209, 232, 373, 570, 756, 774
RsaNI GTAC 6 cut(s) 208, 231, 372, 569, 755, 773
RseI CAYNNNNRTG 3 cut(s) 631, 712, 887
SacI GAGCTC 2 cut(s) 87, 440
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 5 cut(s) 37, 285, 502, 520, 679
Sau96I GGNCC 2 cut(s) 647, 732
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 5 cut(s) 47, 546, 700, 747, 894
SduI GDGCHC 3 cut(s) 87, 440, 884
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 759
SinI GGWCC 1 cut(s) 647
SmiMI CAYNNNNRTG 3 cut(s) 631, 712, 887
Sse9I AATT 1 cut(s) 400
SsiI CCGC 1 cut(s) 506
SspI AATATT 1 cut(s) 805
SspMI CTAG 2 cut(s) 68, 836
SstI GAGCTC 2 cut(s) 87, 440
StyD4I CCNGG 5 cut(s) 45, 544, 698, 745, 892
TaaI ACNGT 4 cut(s) 292, 566, 772, 794
TaiI ACGT 2 cut(s) 126, 445
TaqI TCGA 2 cut(s) 192, 577
TasI AATT 1 cut(s) 400
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 189
TscAI CASTG 5 cut(s) 180, 297, 571, 700, 833
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 4 cut(s) 162, 465, 497, 876
TspRI CASTG 5 cut(s) 180, 297, 571, 700, 833
Van91I CCANNNNNTGG 1 cut(s) 699
VneI GTGCAC 1 cut(s) 880
VpaK11BI GGWCC 1 cut(s) 647
XceI RCATGY 2 cut(s) 677, 779
XspI CTAG 2 cut(s) 68, 836
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.