Rmu_sc0001461.1_g000003

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001461.1
OG0000630
Physical Location & Seq
Reverse (-)
11425 .. 14147
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001461.1_g000003.1.cds

Sequence Viewer

Length: 984 bp
atggaggtttccgaagccccttccttccggccaagagatcgccggcccgacgccctcggaaacttcctagtcctccccgacgagcttatctgtgccgtcttgattctctctgtggattttgaattttcggatataaaatttgaaatgtttgctggtgagattttggagaatgtgtcgtatgaacgcgacgaggcttgcagaaagccactgagttttgatggattcgactctttgttcttgtacagaagattatacaggtgtcataccacattagatggcttttcttttgacagtgggaatgtggaaagaaagggcaaaatcacagtggaagagttttcttgtgactatgatgggaagaaaccggttttgctcactggattagctgatgcatgggctgcaaggcgtacatggacactagaccacttattgcagaattatggagatacagctttcaagatttctcaaagcagctcacgtaaaatctcaatgacattcaaggattatgtttcatatatgaaagttcagcatgatgaggatccgctttatatctttgatcacaagtttggagaggttgaacctggcttgttgaaagattacagtgtaccttatctatttcaagaggacttttttgatgttttggacaaagataagcgacctccatttagatggctcattattggtccccagaggtctggtgcttcttggcatgttgatccagctctgaccagtgcctggaatacgcttctatgtggtcgtaaaaggtgggccttgtatcctccaggaagagtacctataggtgtcacagtacatgtaaacgaagaagacggtgatgtcaatattgaaactccaacttcgttgcagtggtggctagatttttatccacttcttgctgatgaagacaagcccatagagtgcacccaaataccgagggagacgagtttcgttcctagtggatggtggcacgtactgtgtcctaaatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

327

Amino Acids

37.81

Weight (kDa)

4.95

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 830
AccB7I CCANNNNNTGG 1 cut(s) 732
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 539
AclWI GGATC 3 cut(s) 530, 543, 707
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 2 cut(s) 122, 137
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 6 cut(s) 242, 406, 603, 789, 807, 966
AfiI CCNNNNNNNGG 1 cut(s) 732
AflIII ACRYGT 1 cut(s) 808
AgeI ACCGGT 1 cut(s) 361
AgsI TTSAA 8 cut(s) 122, 143, 454, 496, 575, 589, 617, 842
AjnI CCWGG 3 cut(s) 577, 731, 778
AluBI AGCT 5 cut(s) 85, 383, 449, 471, 719
AluI AGCT 5 cut(s) 85, 383, 449, 471, 719
Alw21I GWGCWC 1 cut(s) 917
Alw26I GTCTC 1 cut(s) 926
Alw44I GTGCAC 1 cut(s) 913
AlwI GGATC 3 cut(s) 530, 543, 707
AlwNI CAGNNNCTG 1 cut(s) 732
AoxI GGCC 3 cut(s) 29, 44, 765
ApaLI GTGCAC 1 cut(s) 913
ApeKI GCWGC 2 cut(s) 395, 468
ApoI RAATTY 2 cut(s) 122, 137
AsiGI ACCGGT 1 cut(s) 361
AspS9I GGNCC 3 cut(s) 45, 680, 765
AsuHPI GGTGA 2 cut(s) 167, 839
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 917
BamHI GGATCC 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 828, 903
Bbv12I GWGCWC 1 cut(s) 917
BbvI GCAGC 2 cut(s) 382, 480
BccI CCATC 5 cut(s) 212, 269, 344, 660, 948
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 3 cut(s) 579, 733, 780
BciVI GTATCC 1 cut(s) 783
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 926
BfaI CTAG 4 cut(s) 68, 416, 869, 948
BfmI CTRYAG 1 cut(s) 792
BfuI GTATCC 1 cut(s) 783
BisI GCNGC 2 cut(s) 396, 469
BlsI GCNGC 2 cut(s) 397, 470
Bme1390I CCNGG 3 cut(s) 579, 733, 780
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 3 cut(s) 45, 680, 765
BmiI GGNNCC 2 cut(s) 537, 682
BmrFI CCNGG 3 cut(s) 579, 733, 780
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 2 cut(s) 828, 903
BpmI CTGGAG 1 cut(s) 762
BsaAI YACGTR 2 cut(s) 476, 964
BsaBI GATNNNNATC 2 cut(s) 534, 876
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 55, 926
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 732
Bse118I RCCGGY 2 cut(s) 42, 361
Bse1I ACTGG 2 cut(s) 379, 726
Bse8I GATNNNNATC 2 cut(s) 534, 876
BseBI CCWGG 3 cut(s) 579, 733, 780
BseDI CCNNGG 2 cut(s) 55, 926
BseGI GGATG 1 cut(s) 959
BseJI GATNNNNATC 2 cut(s) 534, 876
BseLI CCNNNNNNNGG 1 cut(s) 732
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 2 cut(s) 379, 726
BseSI GKGCMC 1 cut(s) 917
BseXI GCAGC 2 cut(s) 382, 480
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 31, 46, 767
BshTI ACCGGT 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 917
BsiSI CCGG 3 cut(s) 28, 43, 362
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 1 cut(s) 732
BsmAI GTCTC 1 cut(s) 926
BsmBI CGTCTC 1 cut(s) 926
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 3 cut(s) 31, 46, 767
Bsp1286I GDGCHC 1 cut(s) 917
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 4 cut(s) 37, 535, 553, 712
BspACI CCGC 1 cut(s) 539
BspANI GGCC 3 cut(s) 31, 46, 767
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 537, 682
BspPI GGATC 3 cut(s) 530, 543, 707
BsrFI RCCGGY 2 cut(s) 42, 361
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 2 cut(s) 379, 726
BssAI RCCGGY 2 cut(s) 42, 361
BssECI CCNNGG 2 cut(s) 55, 926
BssMI GATC 4 cut(s) 37, 535, 553, 712
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 579, 733, 780
Bst4CI ACNGT 6 cut(s) 293, 325, 599, 805, 827, 969
Bst6I CTCTTC 2 cut(s) 324, 778
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 395
BstAUI TGTACA 1 cut(s) 240
BstBAI YACGTR 2 cut(s) 476, 964
BstC8I GCNNGC 2 cut(s) 44, 196
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 959
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 4 cut(s) 40, 538, 556, 715
BstMAI GTCTC 1 cut(s) 926
BstMBI GATC 4 cut(s) 37, 535, 553, 712
BstMWI GCNNNNNNNGC 2 cut(s) 395, 865
BstNI CCWGG 3 cut(s) 579, 733, 780
BstNSI RCATGY 2 cut(s) 710, 812
BstSCI CCNGG 3 cut(s) 577, 731, 778
BstSFI CTRYAG 1 cut(s) 792
BstSLI GKGCMC 1 cut(s) 917
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 382, 480
BstV2I GAAGAC 2 cut(s) 828, 903
BstX2I RGATCY 1 cut(s) 535
BstXI CCANNNNNNTGG 2 cut(s) 666, 692
BstYI RGATCY 1 cut(s) 535
BsuI GTATCC 1 cut(s) 783
BsuRI GGCC 3 cut(s) 31, 46, 767
BtsCI GGATG 1 cut(s) 959
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 7 cut(s) 206, 298, 330, 372, 604, 733, 866
Cac8I GCNNGC 2 cut(s) 44, 196
CaiI CAGNNNCTG 1 cut(s) 732
Cfr10I RCCGGY 2 cut(s) 42, 361
Cfr13I GGNCC 3 cut(s) 45, 680, 765
CseI GACGC 1 cut(s) 59
Csp6I GTAC 6 cut(s) 241, 405, 602, 788, 806, 965
CspAI ACCGGT 1 cut(s) 361
CviAII CATG 5 cut(s) 390, 408, 527, 707, 809
CviQI GTAC 6 cut(s) 241, 405, 602, 788, 806, 965
DdeI CTNAG 1 cut(s) 209
DpnI GATC 4 cut(s) 39, 537, 555, 714
DpnII GATC 4 cut(s) 37, 535, 553, 712
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 324, 778
EarI CTCTTC 2 cut(s) 324, 778
Eco47I GGWCC 1 cut(s) 680
EcoRII CCWGG 3 cut(s) 577, 731, 778
EcoT22I ATGCAT 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 926
FaeI CATG 5 cut(s) 393, 411, 530, 710, 812
FaqI GGGAC 1 cut(s) 666
FatI CATG 5 cut(s) 389, 407, 526, 706, 808
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 2 cut(s) 396, 469
FokI GGATG 1 cut(s) 966
Fsp4HI GCNGC 2 cut(s) 396, 469
FspBI CTAG 4 cut(s) 68, 416, 869, 948
GluI GCNGC 2 cut(s) 396, 469
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 3 cut(s) 31, 46, 767
HapII CCGG 3 cut(s) 28, 43, 362
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 393, 411, 530, 710, 812
HinfI GANTC 3 cut(s) 103, 222, 227
HpaII CCGG 3 cut(s) 28, 43, 362
HphI GGTGA 2 cut(s) 167, 839
Hpy166II GTNNAC 3 cut(s) 602, 814, 915
Hpy188I TCNGA 4 cut(s) 13, 59, 130, 723
Hpy188III TCNNGA 4 cut(s) 100, 454, 617, 981
Hpy8I GTNNAC 3 cut(s) 602, 814, 915
Hpy99I CGWCG 3 cut(s) 53, 83, 191
HpyAV CCTTC 2 cut(s) 30, 34
HpyCH4III ACNGT 6 cut(s) 293, 325, 599, 805, 827, 969
HpyCH4IV ACGT 2 cut(s) 475, 963
HpyCH4V TGCA 6 cut(s) 198, 389, 398, 430, 859, 915
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 865
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 2 cut(s) 475, 963
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 393, 411, 530, 710, 812
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 4 cut(s) 37, 535, 553, 712
Lsp1109I GCAGC 2 cut(s) 382, 480
LweI GCATC 1 cut(s) 376
MaeI CTAG 4 cut(s) 68, 416, 869, 948
MaeII ACGT 2 cut(s) 475, 963
MaeIII GTNAC 2 cut(s) 341, 799
MalI GATC 4 cut(s) 39, 537, 555, 714
MboI GATC 4 cut(s) 37, 535, 553, 712
MboII GAAGA 7 cut(s) 258, 341, 367, 795, 830, 833, 908
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 917
MluCI AATT 3 cut(s) 122, 137, 433
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 872
Mph1103I ATGCAT 1 cut(s) 391
MroNI GCCGGC 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 664
MspI CCGG 3 cut(s) 28, 43, 362
MspR9I CCNGG 3 cut(s) 579, 733, 780
MvaI CCWGG 3 cut(s) 579, 733, 780
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 395, 865
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 4 cut(s) 37, 535, 553, 712
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 5 cut(s) 393, 411, 530, 710, 812
NlaIV GGNNCC 2 cut(s) 537, 682
NmuCI GTSAC 2 cut(s) 341, 799
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 2 cut(s) 710, 812
PciI ACATGT 1 cut(s) 808
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 103, 222
PflMI CCANNNNNTGG 1 cut(s) 732
PfoI TCCNGGA 1 cut(s) 778
PinAI ACCGGT 1 cut(s) 361
PkrI GCNGC 2 cut(s) 397, 470
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Ppu21I YACGTR 2 cut(s) 476, 964
PscI ACATGT 1 cut(s) 808
Psp6I CCWGG 3 cut(s) 577, 731, 778
PspGI CCWGG 3 cut(s) 577, 731, 778
PspN4I GGNNCC 2 cut(s) 537, 682
PspPI GGNCC 3 cut(s) 45, 680, 765
PstNI CAGNNNCTG 1 cut(s) 732
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 6 cut(s) 242, 406, 603, 789, 807, 966
RsaNI GTAC 6 cut(s) 241, 405, 602, 788, 806, 965
RseI CAYNNNNRTG 1 cut(s) 664
SatI GCNGC 2 cut(s) 396, 469
Sau3AI GATC 4 cut(s) 37, 535, 553, 712
Sau96I GGNCC 3 cut(s) 45, 680, 765
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 3 cut(s) 579, 733, 780
SduI GDGCHC 1 cut(s) 917
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 792
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 664
Sse9I AATT 3 cut(s) 122, 137, 433
SsiI CCGC 1 cut(s) 539
SspI AATATT 1 cut(s) 838
SspMI CTAG 4 cut(s) 68, 416, 869, 948
StyD4I CCNGG 3 cut(s) 577, 731, 778
TaaI ACNGT 6 cut(s) 293, 325, 599, 805, 827, 969
TaiI ACGT 2 cut(s) 478, 966
TaqI TCGA 1 cut(s) 225
TasI AATT 3 cut(s) 122, 137, 433
TatI WGTACW 2 cut(s) 240, 805
TfiI GAWTC 2 cut(s) 103, 222
TscAI CASTG 7 cut(s) 213, 298, 330, 379, 604, 733, 866
TseFI GTSAC 2 cut(s) 341, 799
TseI GCWGC 2 cut(s) 395, 468
Tsp45I GTSAC 2 cut(s) 341, 799
TspDTI ATGAA 4 cut(s) 195, 498, 530, 909
TspRI CASTG 7 cut(s) 213, 298, 330, 379, 604, 733, 866
Van91I CCANNNNNTGG 1 cut(s) 732
VneI GTGCAC 1 cut(s) 913
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 2 cut(s) 122, 137
XceI RCATGY 2 cut(s) 710, 812
XspI CTAG 4 cut(s) 68, 416, 869, 948
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.