Rmu_sc0033806.1_g000001

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033806.1
Physical Location & Seq
Reverse (-)
1 .. 1053
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033806.1_g000001.1.cds

Sequence Viewer

Length: 596 bp
aagaagacggtgatgtcaatattgaaactccaacttcgttgcagtggtggctagatttttatccacttcttgctgatgaagacaagcccatagagtgcacccaaatgccgggggagacgattttcgttccaagtggatggtggcactgtgtcctaaatcttgaaccatctattgctgttacccagaactttgtgaattctaagaactttgaatttgtgtgcttggatatggcacctggttatcgtcacaagggagtttgccgtgctggattacttgcagatgatgaaggcagtattgaggattccacaaatcatatactctatgataaagatgataataattcctcagatatgactaggaaagtaaaaagagtcagaactctcaaacctggagaatatcctagtactgaaagaactagtaatggtgctcagggtttttcttatgatgtaaatttcttagccatgtatctggatgaagagagagatcattacaactctccttggagctcaggcaattgcatagggcaacgagaaatgagagaatggttattcaagctttgggttggaaaaccaggaatgagagacttgatctggaag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

198

Amino Acids

22.83

Weight (kDa)

4.73

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 231
AcsI RAATTY 3 cut(s) 195, 211, 450
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 4 cut(s) 25, 163, 211, 552
AhlI ACTAGT 1 cut(s) 415
AjnI CCWGG 3 cut(s) 234, 387, 570
AluBI AGCT 2 cut(s) 506, 555
AluI AGCT 2 cut(s) 506, 555
Alw21I GWGCWC 3 cut(s) 100, 429, 508
Alw26I GTCTC 2 cut(s) 109, 575
Alw44I GTGCAC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 96
ApoI RAATTY 3 cut(s) 195, 211, 450
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 100
BanI GGYRCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 508
BbsI GAAGAC 2 cut(s) 11, 86
Bbv12I GWGCWC 3 cut(s) 100, 429, 508
BccI CCATC 2 cut(s) 131, 174
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 3 cut(s) 236, 389, 572
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 2 cut(s) 109, 575
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 4 cut(s) 52, 356, 401, 416
BmcAI AGTACT 1 cut(s) 405
Bme1390I CCNGG 4 cut(s) 110, 236, 389, 572
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 4 cut(s) 110, 236, 389, 572
BpiI GAAGAC 2 cut(s) 11, 86
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 2 cut(s) 428, 507
BpuMI CCSGG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 109, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 3 cut(s) 236, 389, 572
BseDI CCNNGG 2 cut(s) 109, 499
BseGI GGATG 2 cut(s) 142, 477
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 3 cut(s) 359, 442, 521
BseSI GKGCMC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 231
BsiHKAI GWGCWC 3 cut(s) 100, 429, 508
BsiSI CCGG 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 109, 575
BsmBI CGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 3 cut(s) 100, 429, 508
Bsp143I GATC 2 cut(s) 483, 587
BspCNI CTCAG 3 cut(s) 358, 441, 520
BspLI GGNNCC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 109, 499
BssMI GATC 2 cut(s) 483, 587
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 3 cut(s) 236, 389, 572
Bst4CI ACNGT 2 cut(s) 10, 148
Bst6I CTCTTC 1 cut(s) 470
BstDEI CTNAG 5 cut(s) 200, 345, 428, 456, 507
BstF5I GGATG 2 cut(s) 142, 477
BstKTI GATC 2 cut(s) 486, 590
BstMAI GTCTC 2 cut(s) 109, 575
BstMBI GATC 2 cut(s) 483, 587
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNI CCWGG 3 cut(s) 236, 389, 572
BstSCI CCNGG 4 cut(s) 108, 234, 387, 570
BstSLI GKGCMC 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 11, 86
BstXI CCANNNNNNTGG 2 cut(s) 137, 468
BtsCI GGATG 2 cut(s) 142, 477
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 49, 144
CsiI ACCWGGT 1 cut(s) 234
Csp6I GTAC 1 cut(s) 404
CviAII CATG 1 cut(s) 462
CviJI RGCY 5 cut(s) 51, 87, 460, 506, 555
CviKI_1 RGCY 5 cut(s) 51, 87, 460, 506, 555
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 5 cut(s) 200, 345, 428, 456, 507
DpnI GATC 2 cut(s) 485, 589
DpnII GATC 2 cut(s) 483, 587
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Ecl136II GAGCTC 1 cut(s) 506
Eco130I CCWWGG 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 506
EcoICRI GAGCTC 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 3 cut(s) 234, 387, 570
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 499
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 1 cut(s) 465
FaiI YATR 9 cut(s) 91, 229, 314, 316, 323, 352, 443, 463, 520
FatI CATG 1 cut(s) 461
FokI GGATG 2 cut(s) 149, 484
FriOI GRGCYC 1 cut(s) 508
FspBI CTAG 4 cut(s) 52, 356, 401, 416
GsuI CTGGAG 1 cut(s) 410
HapII CCGG 1 cut(s) 109
Hin1II CATG 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 553
HinfI GANTC 2 cut(s) 301, 371
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 348, 376
Hpy188III TCNNGA 3 cut(s) 160, 469, 591
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 2 cut(s) 10, 148
HpyCH4V TGCA 4 cut(s) 42, 98, 277, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 5 cut(s) 200, 345, 428, 456, 507
Hsp92II CATG 1 cut(s) 465
Kzo9I GATC 2 cut(s) 483, 587
LmnI GCTCC 1 cut(s) 503
MabI ACCWGGT 1 cut(s) 234
MaeI CTAG 4 cut(s) 52, 356, 401, 416
MaeIII GTNAC 2 cut(s) 177, 244
MalI GATC 2 cut(s) 485, 589
MboI GATC 2 cut(s) 483, 587
MboII GAAGA 3 cut(s) 16, 91, 487
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 3 cut(s) 100, 429, 508
MluCI AATT 5 cut(s) 195, 211, 339, 450, 513
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 2 cut(s) 55, 543
MnlI CCTC 2 cut(s) 291, 354
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 4 cut(s) 110, 236, 389, 572
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 3 cut(s) 236, 389, 572
MwoI GCNNNNNNNGC 1 cut(s) 48
NciI CCSGG 1 cut(s) 110
NdeII GATC 2 cut(s) 483, 587
NlaIII CATG 1 cut(s) 465
NlaIV GGNNCC 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 301
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 508
Psp6I CCWGG 3 cut(s) 234, 387, 570
PspGI CCWGG 3 cut(s) 234, 387, 570
PspN4I GGNNCC 1 cut(s) 233
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 103
SacI GAGCTC 1 cut(s) 508
Sau3AI GATC 2 cut(s) 483, 587
ScaI AGTACT 1 cut(s) 405
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 4 cut(s) 110, 236, 389, 572
SduI GDGCHC 3 cut(s) 100, 429, 508
SetI ASST 4 cut(s) 237, 390, 508, 557
SexAI ACCWGGT 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 103
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 5 cut(s) 195, 211, 339, 450, 513
SspI AATATT 1 cut(s) 21
SspMI CTAG 4 cut(s) 52, 356, 401, 416
SstI GAGCTC 1 cut(s) 508
StyD4I CCNGG 4 cut(s) 108, 234, 387, 570
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 2 cut(s) 10, 148
TasI AATT 5 cut(s) 195, 211, 339, 450, 513
TatI WGTACW 1 cut(s) 403
TfiI GAWTC 1 cut(s) 301
TscAI CASTG 2 cut(s) 49, 151
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 92, 299, 488
TspRI CASTG 2 cut(s) 49, 151
VneI GTGCAC 1 cut(s) 96
XapI RAATTY 3 cut(s) 195, 211, 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 4 cut(s) 52, 356, 401, 416
ZrmI AGTACT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.