Rh7DG458900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000630
Physical Location & Seq
Reverse (-)
65215357 .. 65218304
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG458900.1

Sequence Viewer

Length: 1215 bp
ATGAGCAACTGTGTAATCAAAATTTTTGTTGAGGAAGGACTGGAAACGTCACTTTATGGATTAGGTGCTGAGCTTGAGTTCTACAGTCTCCCAGGCAAAGTCAAATCCCCTCTGAAAAATCACATACCTGACGTTTTGGCAAGTGGGATCATTTATCTTGAAAATGGAACTTATAAAATTGTACCTTGGGATGGCAACGGAGTTCCTGATGTGATTGCTAACTGCAATTTTATTCCGGAGAAGGTCAAAGGAGATGTTTCTCCTTTTGGTGTATGGAGGAAGAAACAATTTGAATACAGAAAAGCTGGGGTCTCAACAAACGAATCCATCAGTTCAGCTGAATATACAAGGATATGGCCATATCTCATAACAAAACGATGCAAAGGAAAAATATATGCAGAGTTAAGAGATACTGTGTCAATGGACGATGAACTGAACTTAGCTTCCTTCCTGGGAGAGAAGCTCCGCAACCTCCATCTCTTGCCCCATCCACCTCTTAATATCTCAACTTTCTCAGATATTGAACAGGAATCAGATTTTCCCTTCACCAACGGTAGTATGGAAGCTAAGAAGAAGGATGTCTCAAGTCGCTTGATTAAATGGGGAGATCCAATTCCTAGCACACTCATAGAGAAAGTTGACAAATACATCCCCGATGATTTTGCCAAGTTTCTGTACATATTCAAGGATGAAAATGGTGTAAGCAATGTTGGTAAAAGTTGTTCGTGGATACACTCTGATATCATGGATGACAACATTCACATGGGACTATGTGGTTTTAATTCTTGCGTCATTGGCAATGTCAAAAACACTTGCCTGGTAAAGAATGGTTCCTTGAATGTTGATGGTGACCGTGCAAAGAGGAGAACATGGTGCCCTAGCCACATTCTTGATTTCAGTAATCTTTCTATTCTTGATTTCAGTGATCCCATCTATGATTTGATACCCTTATACTTGGATATATTCAGAGGAGATTGCTGCCTCCTTAAGAGATTTTTAGTTAGTTATAAACTTCCTTTAGTAAGACAAGCATCACCTCATGAGTCTATTGAGGGTGGCAACAAGTTTGGACGACTTTCATACCATGCCATGTGCTACTGTATTCTACATGAAGAGAATGTCCTGGGAGCAATTTTTCGTCTCTGGGACGAACTCAAGATGGCAAAATCATGGGAAGAAGTTGAACAGGTCGTATGGGGCGAGCTAATTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

404

Amino Acids

45.83

Weight (kDa)

5.8

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 174, 1008
AccB1I GGYRCC 1 cut(s) 873
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 1 cut(s) 466
AclWI GGATC 3 cut(s) 155, 602, 920
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 2 cut(s) 183, 677
AfiI CCNNNNNNNGG 1 cut(s) 191
AflII CTTAAG 1 cut(s) 986
AgsI TTSAA 6 cut(s) 161, 293, 524, 685, 838, 1184
AjnI CCWGG 4 cut(s) 91, 450, 816, 1122
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 7 cut(s) 73, 305, 338, 443, 463, 566, 1204
AluI AGCT 7 cut(s) 73, 305, 338, 443, 463, 566, 1204
Alw26I GTCTC 4 cut(s) 92, 316, 586, 1145
AlwI GGATC 3 cut(s) 155, 602, 920
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 978
ApoI RAATTY 1 cut(s) 21
AsuHPI GGTGA 3 cut(s) 538, 860, 1026
BaeGI GKGCMC 1 cut(s) 878
BalI TGGCCA 1 cut(s) 358
BanI GGYRCC 1 cut(s) 873
BbvI GCAGC 1 cut(s) 965
BccI CCATC 7 cut(s) 185, 335, 483, 495, 839, 938, 1153
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 4 cut(s) 93, 452, 818, 1124
BciVI GTATCC 1 cut(s) 723
BcoDI GTCTC 4 cut(s) 92, 316, 586, 1145
BfaI CTAG 2 cut(s) 618, 879
BfmI CTRYAG 1 cut(s) 82
BfrI CTTAAG 1 cut(s) 986
BfuI GTATCC 1 cut(s) 723
BisI GCNGC 1 cut(s) 979
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 980
Bme1390I CCNGG 4 cut(s) 93, 452, 818, 1124
BmiI GGNNCC 2 cut(s) 832, 875
BmrFI CCNGG 4 cut(s) 93, 452, 818, 1124
BmsI GCATC 2 cut(s) 368, 1040
BplI GAGNNNNNCTC 2 cut(s) 447, 479
Bpu1102I GCTNAGC 1 cut(s) 69
BpuEI CTTGAG 3 cut(s) 95, 568, 1139
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 4 cut(s) 91, 185, 451, 1123
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 2 cut(s) 712, 805
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 4 cut(s) 93, 452, 818, 1124
BseDI CCNNGG 4 cut(s) 91, 185, 451, 1123
BseGI GGATG 6 cut(s) 196, 487, 583, 648, 694, 754
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 2 cut(s) 712, 805
BseMII CTCAG 2 cut(s) 60, 528
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 877, 984
BseSI GKGCMC 1 cut(s) 878
BseXI GCAGC 1 cut(s) 965
BseYI CCCAGC 1 cut(s) 305
BshFI GGCC 1 cut(s) 358
BshNI GGYRCC 1 cut(s) 873
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 2 cut(s) 780, 1160
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 4 cut(s) 92, 316, 586, 1145
BsmBI CGTCTC 1 cut(s) 1145
BsmFI GGGAC 2 cut(s) 780, 1160
BsnI GGCC 1 cut(s) 358
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 878
Bsp13I TCCGGA 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 675
Bsp143I GATC 3 cut(s) 147, 607, 925
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 1 cut(s) 466
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 61, 527
BspEI TCCGGA 1 cut(s) 235
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 2 cut(s) 832, 875
BspPI GGATC 3 cut(s) 155, 602, 920
BspT107I GGYRCC 1 cut(s) 873
BspTI CTTAAG 1 cut(s) 986
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 2 cut(s) 712, 805
BsrGI TGTACA 1 cut(s) 675
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 4 cut(s) 91, 185, 451, 1123
BssMI GATC 3 cut(s) 147, 607, 925
BssT1I CCWWGG 1 cut(s) 185
Bst2UI CCWGG 4 cut(s) 93, 452, 818, 1124
Bst4CI ACNGT 6 cut(s) 11, 86, 415, 554, 854, 1100
Bst6I CTCTTC 1 cut(s) 1107
BstAFI CTTAAG 1 cut(s) 986
BstAUI TGTACA 1 cut(s) 675
BstC8I GCNNGC 1 cut(s) 1202
BstDEI CTNAG 4 cut(s) 69, 439, 514, 567
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 6 cut(s) 196, 487, 583, 648, 694, 754
BstKTI GATC 3 cut(s) 150, 610, 928
BstMAI GTCTC 4 cut(s) 92, 316, 586, 1145
BstMBI GATC 3 cut(s) 147, 607, 925
BstMWI GCNNNNNNNGC 1 cut(s) 795
BstNI CCWGG 4 cut(s) 93, 452, 818, 1124
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 4 cut(s) 91, 450, 816, 1122
BstSFI CTRYAG 1 cut(s) 82
BstSLI GKGCMC 1 cut(s) 878
BstV1I GCAGC 1 cut(s) 965
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuI GTATCC 1 cut(s) 723
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 6 cut(s) 196, 487, 583, 648, 694, 754
BtsIMutI CAGTG 1 cut(s) 928
Cac8I GCNNGC 1 cut(s) 1202
CciI TCATGA 1 cut(s) 1039
CseI GACGC 1 cut(s) 778
Csp6I GTAC 2 cut(s) 182, 676
CviAII CATG 8 cut(s) 745, 763, 870, 1040, 1085, 1090, 1109, 1170
CviJI RGCY 9 cut(s) 73, 305, 338, 358, 443, 463, 566, 882, 1204
CviKI_1 RGCY 9 cut(s) 73, 305, 338, 358, 443, 463, 566, 882, 1204
CviQI GTAC 2 cut(s) 182, 676
DdeI CTNAG 4 cut(s) 69, 439, 514, 567
DpnI GATC 3 cut(s) 149, 609, 927
DpnII GATC 3 cut(s) 147, 607, 925
EaeI YGGCCR 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 1107
EarI CTCTTC 1 cut(s) 1107
Eco130I CCWWGG 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 742
Eco91I GGTNACC 1 cut(s) 848
EcoO65I GGTNACC 1 cut(s) 848
EcoRII CCWGG 4 cut(s) 91, 450, 816, 1122
EcoRV GATATC 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
Esp3I CGTCTC 1 cut(s) 1145
FaeI CATG 8 cut(s) 748, 766, 873, 1043, 1088, 1093, 1112, 1173
FaqI GGGAC 2 cut(s) 780, 1160
FatI CATG 8 cut(s) 744, 762, 869, 1039, 1084, 1089, 1108, 1169
Fnu4HI GCNGC 1 cut(s) 979
FokI GGATG 6 cut(s) 203, 474, 590, 635, 701, 761
Fsp4HI GCNGC 1 cut(s) 979
FspBI CTAG 2 cut(s) 618, 879
GluI GCNGC 1 cut(s) 979
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 778
Hin1II CATG 8 cut(s) 748, 766, 873, 1043, 1088, 1093, 1112, 1173
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 3 cut(s) 323, 530, 1043
HpaII CCGG 1 cut(s) 236
HphI GGTGA 3 cut(s) 538, 860, 1026
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 5 cut(s) 114, 517, 535, 739, 968
Hpy188III TCNNGA 7 cut(s) 158, 206, 236, 890, 914, 1040, 1156
Hpy8I GTNNAC 1 cut(s) 640
HpyAV CCTTC 5 cut(s) 29, 235, 457, 553, 568
HpyCH4III ACNGT 6 cut(s) 11, 86, 415, 554, 854, 1100
HpyCH4IV ACGT 2 cut(s) 47, 132
HpyCH4V TGCA 4 cut(s) 225, 381, 398, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 795
HpyF3I CTNAG 4 cut(s) 69, 439, 514, 567
HpySE526I ACGT 2 cut(s) 47, 132
Hsp92II CATG 8 cut(s) 748, 766, 873, 1043, 1088, 1093, 1112, 1173
Kpn2I TCCGGA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 147, 607, 925
LmnI GCTCC 2 cut(s) 468, 1127
Lsp1109I GCAGC 1 cut(s) 965
LweI GCATC 2 cut(s) 368, 1040
MaeI CTAG 2 cut(s) 618, 879
MaeII ACGT 2 cut(s) 47, 132
MaeIII GTNAC 2 cut(s) 48, 848
MalI GATC 3 cut(s) 149, 609, 927
MboI GATC 3 cut(s) 147, 607, 925
MboII GAAGA 4 cut(s) 292, 583, 1124, 1187
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 878
MlsI TGGCCA 1 cut(s) 358
MluCI AATT 8 cut(s) 21, 177, 226, 287, 612, 781, 1131, 1206
MluNI TGGCCA 1 cut(s) 358
MlyI GAGTC 1 cut(s) 1052
Mox20I TGGCCA 1 cut(s) 358
MroI TCCGGA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 358
MseI TTAA 6 cut(s) 404, 498, 597, 780, 987, 1209
MslI CAYNNNNRTG 1 cut(s) 761
Msp20I TGGCCA 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 986
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 4 cut(s) 93, 452, 818, 1124
MvaI CCWGG 4 cut(s) 93, 452, 818, 1124
MwoI GCNNNNNNNGC 1 cut(s) 795
NdeII GATC 3 cut(s) 147, 607, 925
NlaIII CATG 8 cut(s) 748, 766, 873, 1043, 1088, 1093, 1112, 1173
NlaIV GGNNCC 2 cut(s) 832, 875
NmuCI GTSAC 2 cut(s) 48, 848
PagI TCATGA 1 cut(s) 1039
PcsI WCGNNNNNNNCGW 1 cut(s) 1197
PfeI GAWTC 2 cut(s) 323, 530
PkrI GCNGC 1 cut(s) 980
PleI GAGTC 1 cut(s) 1051
PpsI GAGTC 1 cut(s) 1051
PsiI TTATAA 2 cut(s) 174, 1008
Psp6I CCWGG 4 cut(s) 91, 450, 816, 1122
PspEI GGTNACC 1 cut(s) 848
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 4 cut(s) 91, 450, 816, 1122
PspN4I GGNNCC 2 cut(s) 832, 875
PsrI GAACNNNNNNTAC 2 cut(s) 706, 738
PsuI RGATCY 1 cut(s) 607
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 183, 677
RsaNI GTAC 2 cut(s) 182, 676
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 6 cut(s) 404, 498, 597, 780, 987, 1209
SatI GCNGC 1 cut(s) 979
Sau3AI GATC 3 cut(s) 147, 607, 925
SchI GAGTC 1 cut(s) 1052
ScrFI CCNGG 4 cut(s) 93, 452, 818, 1124
SduI GDGCHC 1 cut(s) 878
SfaNI GCATC 2 cut(s) 368, 1040
SfcI CTRYAG 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 4 cut(s) 74, 583, 986, 1154
SmoI CTYRAG 4 cut(s) 74, 583, 986, 1154
Sse9I AATT 8 cut(s) 21, 177, 226, 287, 612, 781, 1131, 1206
SsiI CCGC 1 cut(s) 466
SspMI CTAG 2 cut(s) 618, 879
StyD4I CCNGG 4 cut(s) 91, 450, 816, 1122
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 6 cut(s) 11, 86, 415, 554, 854, 1100
TaiI ACGT 2 cut(s) 50, 135
TasI AATT 8 cut(s) 21, 177, 226, 287, 612, 781, 1131, 1206
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 2 cut(s) 323, 530
Tru1I TTAA 6 cut(s) 404, 498, 597, 780, 987, 1209
Tru9I TTAA 6 cut(s) 404, 498, 597, 780, 987, 1209
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 2 cut(s) 48, 848
TseI GCWGC 1 cut(s) 978
Tsp45I GTSAC 2 cut(s) 48, 848
TspDTI ATGAA 4 cut(s) 444, 705, 1068, 1125
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 928
Vha464I CTTAAG 1 cut(s) 986
XapI RAATTY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XspI CTAG 2 cut(s) 618, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.