Rh5DG444300

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
71036795 .. 71037789
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG444300.1

Sequence Viewer

Length: 384 bp
ATGACATTCAAGGATTATGTTTCATATTTGAAGGTTCAGCATGATGAAGATCCGCTTTATATCTTTGATCACAAGTTTGGAGAGGTTCAACCTGGCTTGTTGAAAGATTACAGTGTACCTTATCTATTTCAAGAGGATTTTTTTGATGTTTTGGACAAAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCAGAGGTCTGGTGCTTCTTGGCATGTTGATCCGGCTCTGACCAGTGCCTGGAATACGCTTCTATGTGGTCGTAAAAGGTGGGCCTTGTGTCCTCCAGGAAGAGTACCTATAGGTGTCACAGTACATGTAAATGAAGAAGACGGTGATGTCAATATTGAAATGGGTGTGGTTTTGGTTGTGGTTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.59

Weight (kDa)

5.23

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 246
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 44, 221
AfaI GTAC 3 cut(s) 117, 303, 321
AfiI CCNNNNNNNGG 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 6 cut(s) 10, 31, 89, 103, 131, 356
AjnI CCWGG 3 cut(s) 91, 245, 292
AlwI GGATC 2 cut(s) 44, 221
AlwNI CAGNNNCTG 1 cut(s) 246
AoxI GGCC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 194, 279
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 342
BccI CCATC 1 cut(s) 174
BciT130I CCWGG 3 cut(s) 93, 247, 294
BclI TGATCA 1 cut(s) 67
BfmI CTRYAG 1 cut(s) 306
Bme1390I CCNGG 3 cut(s) 93, 247, 294
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 194, 279
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 3 cut(s) 93, 247, 294
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 3 cut(s) 93, 247, 294
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 240
BshFI GGCC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 3 cut(s) 49, 67, 226
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 2 cut(s) 44, 221
BsrI ACTGG 1 cut(s) 240
BssMI GATC 3 cut(s) 49, 67, 226
Bst2UI CCWGG 3 cut(s) 93, 247, 294
Bst4CI ACNGT 3 cut(s) 113, 319, 341
Bst6I CTCTTC 1 cut(s) 292
BstKTI GATC 3 cut(s) 52, 70, 229
BstMBI GATC 3 cut(s) 49, 67, 226
BstNI CCWGG 3 cut(s) 93, 247, 294
BstNSI RCATGY 2 cut(s) 224, 326
BstSCI CCNGG 3 cut(s) 91, 245, 292
BstSFI CTRYAG 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 2 cut(s) 180, 206
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 118, 247
CaiI CAGNNNCTG 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 194, 279
Csp6I GTAC 3 cut(s) 116, 302, 320
CviAII CATG 3 cut(s) 41, 221, 323
CviJI RGCY 4 cut(s) 96, 184, 233, 281
CviKI_1 RGCY 4 cut(s) 96, 184, 233, 281
CviQI GTAC 3 cut(s) 116, 302, 320
DpnI GATC 3 cut(s) 51, 69, 228
DpnII GATC 3 cut(s) 49, 67, 226
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 194
EcoRII CCWGG 3 cut(s) 91, 245, 292
FaeI CATG 3 cut(s) 44, 224, 326
FaiI YATR 8 cut(s) 18, 25, 42, 60, 222, 262, 308, 324
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 180
FatI CATG 3 cut(s) 40, 220, 322
FbaI TGATCA 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 230
Hin1II CATG 3 cut(s) 44, 224, 326
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 113, 319, 341
Hsp92II CATG 3 cut(s) 44, 224, 326
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 3 cut(s) 49, 67, 226
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 51, 69, 228
MboI GATC 3 cut(s) 49, 67, 226
MboII GAAGA 4 cut(s) 59, 309, 344, 347
MflI RGATCY 1 cut(s) 49
MnlI CCTC 5 cut(s) 76, 127, 180, 195, 300
MslI CAYNNNNRTG 2 cut(s) 178, 327
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 93, 247, 294
MvaI CCWGG 3 cut(s) 93, 247, 294
NdeII GATC 3 cut(s) 49, 67, 226
NlaIII CATG 3 cut(s) 44, 224, 326
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 2 cut(s) 224, 326
PciI ACATGT 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 246
PfoI TCCNGGA 1 cut(s) 292
PscI ACATGT 1 cut(s) 322
Psp6I CCWGG 3 cut(s) 91, 245, 292
PspGI CCWGG 3 cut(s) 91, 245, 292
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 194, 279
PstNI CAGNNNCTG 1 cut(s) 246
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 3 cut(s) 117, 303, 321
RsaNI GTAC 3 cut(s) 116, 302, 320
RseI CAYNNNNRTG 2 cut(s) 178, 327
Sau3AI GATC 3 cut(s) 49, 67, 226
Sau96I GGNCC 2 cut(s) 194, 279
ScrFI CCNGG 3 cut(s) 93, 247, 294
SetI ASST 9 cut(s) 36, 87, 94, 121, 172, 206, 278, 307, 313
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 178, 327
SsiI CCGC 1 cut(s) 53
SspI AATATT 1 cut(s) 352
StyD4I CCNGG 3 cut(s) 91, 245, 292
TaaI ACNGT 3 cut(s) 113, 319, 341
TatI WGTACW 1 cut(s) 319
TscAI CASTG 2 cut(s) 118, 247
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 12, 60, 345
TspRI CASTG 2 cut(s) 118, 247
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 2 cut(s) 224, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.