Rh4CG066500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000630
Physical Location & Seq
Forward (+)
12549980 .. 12551548
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG066500.1

Sequence Viewer

Length: 624 bp
ATGAATCCTGCAACATTGCCATTCCTTCCTTCAAATTTTTCTTCATTTCTACTTGTCCTTCTTGCAGCTCAGATTGAGAATCTTGGATTTTCCTTGATTGCTCATAAACTGTTGCGGAATGCTTCAACACCACATCTATATGATCTTCCACATTTTGTGCAGTCTGAGCAACTTGCTGTGTTCGAAGATCAATCGAATTCAAAGACTCAAATATTTGATTTGACCCATGCAGTAGATGCTCTGCCTTCTCTTCAATTATTTCCAACTTGCCTTCTGCATACTGAGCTGAATTTGACCCAGTTCCCACCCCAGTCAACCAATATCTTACCAGACCATATTTTTCTTATTGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACGTTTTGGACAAAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCAGAGGTCTGGTGCTTCTTGGCATGTTGATCCGGCTCTGACCAGTGCCTGGAATACGCTTCTATGTGGTCGTAAAAGGTGGGCCTTGTGTCCTCCAGGAAGAGTACCTATAGGTGTCACAGTACATGTAAATGAAGAAGACGGTGATGTCAATATTGAAATGGGTGTGGTTTTGGTTGTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

5.85

Isoelectric Point (pI)

67.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 486
AciI CCGC 1 cut(s) 115
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 3 cut(s) 34, 196, 289
AfaI GTAC 3 cut(s) 373, 543, 561
AfiI CCNNNNNNNGG 1 cut(s) 486
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 5 cut(s) 33, 126, 201, 254, 596
AjnI CCWGG 2 cut(s) 485, 532
AluBI AGCT 2 cut(s) 68, 286
AluI AGCT 2 cut(s) 68, 286
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 1 cut(s) 486
AoxI GGCC 2 cut(s) 359, 519
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 3 cut(s) 34, 196, 289
AspS9I GGNCC 2 cut(s) 434, 519
AsuHPI GGTGA 1 cut(s) 593
AsuII TTCGAA 1 cut(s) 183
AvaII GGWCC 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 414
BciT130I CCWGG 2 cut(s) 487, 534
BfmI CTRYAG 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 487, 534
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 2 cut(s) 434, 519
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 487, 534
BmrI ACTGGG 2 cut(s) 292, 304
BmsI GCATC 2 cut(s) 226, 343
BmuI ACTGGG 2 cut(s) 292, 304
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 516
Bpu14I TTCGAA 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 3 cut(s) 298, 310, 480
Bse3DI GCAATG 1 cut(s) 14
BseBI CCWGG 2 cut(s) 487, 534
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 83, 156, 273
BseNI ACTGG 3 cut(s) 298, 310, 480
BseXI GCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 179
BshFI GGCC 2 cut(s) 361, 521
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 486
BsmFI GGGAC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 2 cut(s) 361, 521
Bsp119I TTCGAA 1 cut(s) 183
Bsp143I GATC 3 cut(s) 142, 187, 466
BspACI CCGC 1 cut(s) 115
BspANI GGCC 2 cut(s) 361, 521
BspCNI CTCAG 3 cut(s) 82, 157, 274
BspLI GGNNCC 1 cut(s) 436
BspPI GGATC 1 cut(s) 461
BspT104I TTCGAA 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 14
BsrI ACTGG 3 cut(s) 298, 310, 480
BssMI GATC 3 cut(s) 142, 187, 466
Bst2UI CCWGG 2 cut(s) 487, 534
Bst4CI ACNGT 3 cut(s) 111, 559, 581
Bst6I CTCTTC 2 cut(s) 255, 532
BstAPI GCANNNNNTGC 2 cut(s) 236, 362
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 3 cut(s) 69, 165, 282
BstKTI GATC 3 cut(s) 145, 190, 469
BstMBI GATC 3 cut(s) 142, 187, 466
BstMWI GCNNNNNNNGC 5 cut(s) 166, 236, 283, 362, 367
BstNI CCWGG 2 cut(s) 487, 534
BstNSI RCATGY 2 cut(s) 464, 566
BstSCI CCNGG 2 cut(s) 485, 532
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 582
BstXI CCANNNNNNTGG 2 cut(s) 420, 446
BsuRI GGCC 2 cut(s) 361, 521
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 363
CaiI CAGNNNCTG 1 cut(s) 486
Cfr13I GGNCC 2 cut(s) 434, 519
Csp6I GTAC 3 cut(s) 372, 542, 560
CviAII CATG 5 cut(s) 227, 357, 375, 461, 563
CviJI RGCY 6 cut(s) 68, 286, 361, 424, 473, 521
CviKI_1 RGCY 6 cut(s) 68, 286, 361, 424, 473, 521
CviQI GTAC 3 cut(s) 372, 542, 560
DdeI CTNAG 3 cut(s) 69, 165, 282
DpnI GATC 3 cut(s) 144, 189, 468
DpnII GATC 3 cut(s) 142, 187, 466
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
Eam1104I CTCTTC 2 cut(s) 255, 532
EarI CTCTTC 2 cut(s) 255, 532
Eco47I GGWCC 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 485, 532
EcoT22I ATGCAT 1 cut(s) 358
FaeI CATG 5 cut(s) 230, 360, 378, 464, 566
FaqI GGGAC 1 cut(s) 420
FatI CATG 5 cut(s) 226, 356, 374, 460, 562
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 2 cut(s) 361, 521
HapII CCGG 1 cut(s) 470
Hin1II CATG 5 cut(s) 230, 360, 378, 464, 566
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 3 cut(s) 4, 79, 205
HpaII CCGG 1 cut(s) 470
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 3 cut(s) 72, 166, 477
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 5 cut(s) 35, 39, 68, 255, 281
HpyCH4III ACNGT 3 cut(s) 111, 559, 581
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 7 cut(s) 11, 65, 160, 230, 277, 356, 365
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 236, 283, 362, 367
HpyF3I CTNAG 3 cut(s) 69, 165, 282
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 5 cut(s) 230, 360, 378, 464, 566
Kzo9I GATC 3 cut(s) 142, 187, 466
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 226, 343
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 553
MalI GATC 3 cut(s) 144, 189, 468
MboI GATC 3 cut(s) 142, 187, 466
MboII GAAGA 7 cut(s) 33, 137, 197, 242, 549, 584, 587
MluCI AATT 4 cut(s) 34, 196, 254, 289
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 3 cut(s) 420, 435, 540
Mph1103I ATGCAT 1 cut(s) 358
MslI CAYNNNNRTG 3 cut(s) 138, 418, 567
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 2 cut(s) 487, 534
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 487, 534
MwoI GCNNNNNNNGC 5 cut(s) 166, 236, 283, 362, 367
NdeII GATC 3 cut(s) 142, 187, 466
NlaIII CATG 5 cut(s) 230, 360, 378, 464, 566
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 2 cut(s) 464, 566
NspV TTCGAA 1 cut(s) 183
PciI ACATGT 1 cut(s) 562
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 4, 79
PflMI CCANNNNNTGG 1 cut(s) 486
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PscI ACATGT 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 485, 532
PspGI CCWGG 2 cut(s) 485, 532
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 2 cut(s) 434, 519
PstNI CAGNNNCTG 1 cut(s) 486
RsaI GTAC 3 cut(s) 373, 543, 561
RsaNI GTAC 3 cut(s) 372, 542, 560
RseI CAYNNNNRTG 3 cut(s) 138, 418, 567
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 142, 187, 466
Sau96I GGNCC 2 cut(s) 434, 519
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 487, 534
SetI ASST 8 cut(s) 70, 288, 390, 412, 446, 518, 547, 553
SfaNI GCATC 2 cut(s) 226, 343
SfcI CTRYAG 1 cut(s) 546
SfuI TTCGAA 1 cut(s) 183
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 3 cut(s) 138, 418, 567
Sse9I AATT 4 cut(s) 34, 196, 254, 289
SsiI CCGC 1 cut(s) 115
SspI AATATT 2 cut(s) 213, 592
StyD4I CCNGG 2 cut(s) 485, 532
TaaI ACNGT 3 cut(s) 111, 559, 581
TaiI ACGT 1 cut(s) 390
TaqI TCGA 2 cut(s) 183, 194
TasI AATT 4 cut(s) 34, 196, 254, 289
TatI WGTACW 1 cut(s) 559
TfiI GAWTC 2 cut(s) 4, 79
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 3 cut(s) 17, 33, 585
TspRI CASTG 1 cut(s) 487
Van91I CCANNNNNTGG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 3 cut(s) 34, 196, 289
XceI RCATGY 2 cut(s) 464, 566
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.