Rw7G039050

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000630
Physical Location & Seq
Reverse (-)
59926929 .. 59928554
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039050.1

Sequence Viewer

Length: 297 bp
ATGTCTTTTTCCAACAGGGAAGACGAATTGAACTTAGTTTCCTTCCTGGGAGAGCAGCTCCATGACCTCCATCTCTTGCCCCATCCACCTCTTAATATCTCAACTTTCTCAGATATTGAACAGGAATCAGATCGTTCGTTCACCAACAGTAGCATGGAGGCTGTTGCCAATAAATCAAATATTCCTGCTGAATGGGATATATTCATTAGAACTCTATCCAAGAAGAAGAAGGATGCCTCGAGCCGCTTGATTAAATGGGGAGATCCAATTTCTAGCACACTTGATAGAGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

98

Amino Acids

11.16

Weight (kDa)

5.06

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 244
AclWI GGATC 1 cut(s) 257
AgsI TTSAA 2 cut(s) 31, 119
AjnI CCWGG 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AlwI GGATC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 78, 90
BciT130I CCWGG 1 cut(s) 47
BfaI CTAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 56, 244
BlsI GCNGC 2 cut(s) 57, 245
Bme1390I CCNGG 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BsaJI CCNNGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 82, 238
BseMII CTCAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 238
Bsp143I GATC 2 cut(s) 130, 262
BspACI CCGC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 122
BspPI GGATC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 2 cut(s) 130, 262
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 34, 109
BstF5I GGATG 2 cut(s) 82, 238
BstKTI GATC 2 cut(s) 133, 265
BstMBI GATC 2 cut(s) 130, 262
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BtsCI GGATG 2 cut(s) 82, 238
CviAII CATG 2 cut(s) 62, 154
CviJI RGCY 3 cut(s) 58, 161, 243
CviKI_1 RGCY 3 cut(s) 58, 161, 243
DdeI CTNAG 2 cut(s) 34, 109
DpnI GATC 2 cut(s) 132, 264
DpnII GATC 2 cut(s) 130, 262
Eco88I CYCGRG 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 65, 157
FaiI YATR 3 cut(s) 63, 155, 200
FatI CATG 2 cut(s) 61, 153
Fnu4HI GCNGC 2 cut(s) 56, 244
FokI GGATG 2 cut(s) 69, 245
Fsp4HI GCNGC 2 cut(s) 56, 244
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 56, 244
Hin1II CATG 2 cut(s) 65, 157
HinfI GANTC 1 cut(s) 125
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 112, 130
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 52, 223
HpyCH4III ACNGT 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 34, 109
Hsp92II CATG 2 cut(s) 65, 157
Kzo9I GATC 2 cut(s) 130, 262
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 4 cut(s) 32, 59, 107, 198
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 273
MalI GATC 2 cut(s) 132, 264
MboI GATC 2 cut(s) 130, 262
MboII GAAGA 3 cut(s) 32, 235, 238
MflI RGATCY 1 cut(s) 262
MluCI AATT 2 cut(s) 26, 267
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 77, 99, 151, 247
MseI TTAA 2 cut(s) 93, 252
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
NdeII GATC 2 cut(s) 130, 262
NlaIII CATG 2 cut(s) 65, 157
PaeR7I CTCGAG 1 cut(s) 238
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 57, 245
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspXI VCTCGAGB 1 cut(s) 238
PsuI RGATCY 1 cut(s) 262
SaqAI TTAA 2 cut(s) 93, 252
SatI GCNGC 2 cut(s) 56, 244
Sau3AI GATC 2 cut(s) 130, 262
ScrFI CCNGG 1 cut(s) 47
SetI ASST 3 cut(s) 60, 69, 91
SfaNI GCATC 1 cut(s) 223
Sfr274I CTCGAG 1 cut(s) 238
SlaI CTCGAG 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 2 cut(s) 26, 267
SsiI CCGC 1 cut(s) 244
SspI AATATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 239
TasI AATT 2 cut(s) 26, 267
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 93, 252
Tru9I TTAA 2 cut(s) 93, 252
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 238
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.