Rmu_sc0000083.1_g000017

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000083.1
Physical Location & Seq
Reverse (-)
90024 .. 90400
377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000083.1_g000017.1.cds

Sequence Viewer

Length: 279 bp
atgacattcaaggattatgtttcatatttgaaggttcagcatgatgaagatccgctttatatctttgatcacaagtttggagaggttcaacctggcttgttgaaagattacagtgtaccttatctatttcaagaggatttttttgatgttttggacaaagataagcgacctccatttagatggctcattattggtccccagaggtctggtgcttcttggcatgttgatccggctctgaccagtgcctggaatacgcttctatgtggtcgtaaaaggtaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.89

Weight (kDa)

6.25

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 246
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 44, 221
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 5 cut(s) 10, 31, 89, 103, 131
AjnI CCWGG 2 cut(s) 91, 245
AlwI GGATC 2 cut(s) 44, 221
AlwNI CAGNNNCTG 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 194
AvaII GGWCC 1 cut(s) 194
BccI CCATC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 93, 247
BclI TGATCA 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 93, 247
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 93, 247
BsaBI GATNNNNATC 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 2 cut(s) 93, 247
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 180
Bsp143I GATC 3 cut(s) 49, 67, 226
BspACI CCGC 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 2 cut(s) 44, 221
BsrI ACTGG 1 cut(s) 240
BssMI GATC 3 cut(s) 49, 67, 226
Bst2UI CCWGG 2 cut(s) 93, 247
Bst4CI ACNGT 1 cut(s) 113
BstKTI GATC 3 cut(s) 52, 70, 229
BstMBI GATC 3 cut(s) 49, 67, 226
BstNI CCWGG 2 cut(s) 93, 247
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 91, 245
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 2 cut(s) 180, 206
BstYI RGATCY 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 118, 247
CaiI CAGNNNCTG 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 41, 221
CviJI RGCY 3 cut(s) 96, 184, 233
CviKI_1 RGCY 3 cut(s) 96, 184, 233
CviQI GTAC 1 cut(s) 116
DpnI GATC 3 cut(s) 51, 69, 228
DpnII GATC 3 cut(s) 49, 67, 226
Eco47I GGWCC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 91, 245
FaeI CATG 2 cut(s) 44, 224
FaiI YATR 6 cut(s) 18, 25, 42, 60, 222, 262
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 180
FatI CATG 2 cut(s) 40, 220
FbaI TGATCA 1 cut(s) 67
HapII CCGG 1 cut(s) 230
Hin1II CATG 2 cut(s) 44, 224
HpaII CCGG 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 113
Hsp92II CATG 2 cut(s) 44, 224
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 3 cut(s) 49, 67, 226
LpnPI CCDG 8 cut(s) 78, 105, 192, 212, 232, 243, 253, 259
MalI GATC 3 cut(s) 51, 69, 228
MboI GATC 3 cut(s) 49, 67, 226
MboII GAAGA 1 cut(s) 59
MflI RGATCY 1 cut(s) 49
MnlI CCTC 4 cut(s) 76, 127, 180, 195
MslI CAYNNNNRTG 1 cut(s) 178
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 93, 247
MvaI CCWGG 2 cut(s) 93, 247
NdeII GATC 3 cut(s) 49, 67, 226
NlaIII CATG 2 cut(s) 44, 224
NlaIV GGNNCC 1 cut(s) 196
NspI RCATGY 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 91, 245
PspGI CCWGG 2 cut(s) 91, 245
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 246
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 178
Sau3AI GATC 3 cut(s) 49, 67, 226
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 93, 247
SetI ASST 7 cut(s) 36, 87, 94, 121, 172, 206, 278
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 178
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 91, 245
TaaI ACNGT 1 cut(s) 113
TscAI CASTG 2 cut(s) 118, 247
TspDTI ATGAA 2 cut(s) 12, 60
TspRI CASTG 2 cut(s) 118, 247
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.