RchiOBHm_Chr7g0243011

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000630
Physical Location & Seq
Reverse (-)
69284761 .. 69287562
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21779

Sequence Viewer

Length: 900 bp
ATGGAGGTTTCCGAAGCCCCTTCCTTCCGGCCAAGAGATCGCAGCCCGGACGCCCTCGGAAACTTCCTAGTCCTCCCCGACGAGCTCATCTGTGTCGTCTTGGAGTTGCTCTCTCCTCGCGACGTTAGCAGGGAGAATGTGTCGTATGAACTCAACGAGGCTTGCAGAAAACCACTGAGTTTTGATGGATTCGACTCTTTGTTCTTGTACAGAAGATTATACAGGTGTCGTACCACATTGGATGGTTTTTCTTTTGACAATGGGAATGTGGAAAGAAAGGACAAGATCACAGTGGAAGAGTTTTCTTGTGATTATGATGGGAAGAAACCGGTTTTGCTCAATGGATTAGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGGAGCTCACGTAAAATCTCAATGACATTCAAGGATTATGTTTCATATATGAAGGTTCAGCATGATGAGGATCCGCTTTATATCTTTGATCACAAGTTTGGAGAGGTTGAACCTGGCTTGTTGAAAGATTACAGTGTACCTTATCGATTTCAAGAGGACTTTTTTGATGTTTTGGACAAAGATAAGCGACCTCCATTTAGATGGCTCATTATTGGTCCCCAGAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACCAGTGCCTGGAATACACTTCTATGTGGTCGTAAAAGGTGGGCCTTGTATCCTCCAGGAAGAGTACCTATAGGTGTCACGGTACATGTAAACGAAGAAGACGGTGATGTCAATATTGAAACTCCAACTTCGTTGCAGTGGTGGCTAGATTTTTATCCACTTCTTGCTGATGAAGACAAGCCCATAGAGTGCACCCAAATGCCGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

299

Amino Acids

34.68

Weight (kDa)

5.05

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 107 - 294 9.1e-09 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 699
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 506
AclWI GGATC 3 cut(s) 497, 510, 674
AcoI YGGCCR 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 6 cut(s) 209, 232, 373, 570, 756, 774
AfiI CCNNNNNNNGG 2 cut(s) 699, 892
AflIII ACRYGT 1 cut(s) 775
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 6 cut(s) 421, 463, 542, 556, 584, 809
AjnI CCWGG 3 cut(s) 544, 698, 745
AluBI AGCT 5 cut(s) 85, 350, 416, 438, 686
AluI AGCT 5 cut(s) 85, 350, 416, 438, 686
Alw21I GWGCWC 3 cut(s) 87, 440, 884
Alw44I GTGCAC 1 cut(s) 880
AlwI GGATC 3 cut(s) 497, 510, 674
AlwNI CAGNNNCTG 1 cut(s) 699
AoxI GGCC 3 cut(s) 29, 359, 732
ApaLI GTGCAC 1 cut(s) 880
ApeKI GCWGC 1 cut(s) 42
AsiGI ACCGGT 1 cut(s) 328
AspS9I GGNCC 2 cut(s) 647, 732
AsuC2I CCSGG 2 cut(s) 47, 894
AsuHPI GGTGA 1 cut(s) 806
AvaII GGWCC 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 884
BamHI GGATCC 1 cut(s) 502
BanII GRGCYC 2 cut(s) 87, 440
BbsI GAAGAC 2 cut(s) 795, 870
Bbv12I GWGCWC 3 cut(s) 87, 440, 884
BbvI GCAGC 1 cut(s) 54
BccI CCATC 4 cut(s) 179, 236, 311, 627
BciT130I CCWGG 3 cut(s) 546, 700, 747
BciVI GTATCC 1 cut(s) 750
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 2 cut(s) 47, 894
BfaI CTAG 2 cut(s) 68, 836
BfmI CTRYAG 1 cut(s) 759
BfuI GTATCC 1 cut(s) 750
BglI GCCNNNNNGGC 1 cut(s) 367
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 5 cut(s) 47, 546, 700, 747, 894
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 2 cut(s) 647, 732
BmiI GGNNCC 2 cut(s) 504, 649
BmrFI CCNGG 5 cut(s) 47, 546, 700, 747, 894
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 2 cut(s) 795, 870
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 729
BpuMI CCSGG 2 cut(s) 47, 894
Bsa29I ATCGAT 1 cut(s) 577
BsaAI YACGTR 1 cut(s) 443
BsaBI GATNNNNATC 2 cut(s) 501, 843
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 55, 893
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 699, 892
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 693
Bse8I GATNNNNATC 2 cut(s) 501, 843
BseBI CCWGG 3 cut(s) 546, 700, 747
BseCI ATCGAT 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 55, 893
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 2 cut(s) 501, 843
BseLI CCNNNNNNNGG 2 cut(s) 699, 892
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 884
BseXI GCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 31, 361, 734
BshTI ACCGGT 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 577
BsiHKAI GWGCWC 3 cut(s) 87, 440, 884
BsiSI CCGG 4 cut(s) 28, 47, 329, 893
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 699, 892
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 3 cut(s) 31, 361, 734
Bsp1286I GDGCHC 3 cut(s) 87, 440, 884
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 5 cut(s) 37, 285, 502, 520, 679
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 1 cut(s) 506
BspANI GGCC 3 cut(s) 31, 361, 734
BspCNI CTCAG 1 cut(s) 168
BspDI ATCGAT 1 cut(s) 577
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 504, 649
BspPI GGATC 3 cut(s) 497, 510, 674
BsrFI RCCGGY 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 55, 893
BssMI GATC 5 cut(s) 37, 285, 502, 520, 679
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 546, 700, 747
Bst4CI ACNGT 4 cut(s) 292, 566, 772, 794
Bst6I CTCTTC 2 cut(s) 291, 745
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 207
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 163, 363
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 5 cut(s) 40, 288, 505, 523, 682
BstMBI GATC 5 cut(s) 37, 285, 502, 520, 679
BstMWI GCNNNNNNNGC 4 cut(s) 126, 362, 367, 832
BstNI CCWGG 3 cut(s) 546, 700, 747
BstNSI RCATGY 2 cut(s) 677, 779
BstSCI CCNGG 5 cut(s) 45, 544, 698, 745, 892
BstSFI CTRYAG 1 cut(s) 759
BstSLI GKGCMC 1 cut(s) 884
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 2 cut(s) 795, 870
BstX2I RGATCY 1 cut(s) 502
BstXI CCANNNNNNTGG 2 cut(s) 633, 659
BstYI RGATCY 1 cut(s) 502
Bsu15I ATCGAT 1 cut(s) 577
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 3 cut(s) 31, 361, 734
BsuTUI ATCGAT 1 cut(s) 577
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 833
BtsIMutI CAGTG 5 cut(s) 173, 297, 571, 700, 833
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 163, 363
CaiI CAGNNNCTG 1 cut(s) 699
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 647, 732
ClaI ATCGAT 1 cut(s) 577
CseI GACGC 1 cut(s) 59
Csp6I GTAC 6 cut(s) 208, 231, 372, 569, 755, 773
CspAI ACCGGT 1 cut(s) 328
CviAII CATG 5 cut(s) 357, 375, 494, 674, 776
CviQI GTAC 6 cut(s) 208, 231, 372, 569, 755, 773
DdeI CTNAG 1 cut(s) 176
DpnI GATC 5 cut(s) 39, 287, 504, 522, 681
DpnII GATC 5 cut(s) 37, 285, 502, 520, 679
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 291, 745
EarI CTCTTC 2 cut(s) 291, 745
Ecl136II GAGCTC 2 cut(s) 85, 438
Eco24I GRGCYC 2 cut(s) 87, 440
Eco47I GGWCC 1 cut(s) 647
Eco53kI GAGCTC 2 cut(s) 85, 438
EcoICRI GAGCTC 2 cut(s) 85, 438
EcoRII CCWGG 3 cut(s) 544, 698, 745
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 2 cut(s) 87, 440
FaeI CATG 5 cut(s) 360, 378, 497, 677, 779
FaqI GGGAC 1 cut(s) 633
FatI CATG 5 cut(s) 356, 374, 493, 673, 775
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 2 cut(s) 87, 440
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 2 cut(s) 68, 836
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 3 cut(s) 31, 361, 734
HapII CCGG 4 cut(s) 28, 47, 329, 893
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 360, 378, 497, 677, 779
HinfI GANTC 2 cut(s) 189, 194
HpaII CCGG 4 cut(s) 28, 47, 329, 893
HphI GGTGA 1 cut(s) 806
Hpy166II GTNNAC 3 cut(s) 569, 781, 882
Hpy188I TCNGA 3 cut(s) 13, 59, 690
Hpy188III TCNNGA 3 cut(s) 119, 421, 584
Hpy8I GTNNAC 3 cut(s) 569, 781, 882
Hpy99I CGWCG 2 cut(s) 83, 125
HpyAV CCTTC 3 cut(s) 30, 34, 478
HpyCH4III ACNGT 4 cut(s) 292, 566, 772, 794
HpyCH4IV ACGT 2 cut(s) 123, 442
HpyCH4V TGCA 6 cut(s) 165, 356, 365, 397, 826, 882
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 362, 367, 832
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 2 cut(s) 123, 442
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 360, 378, 497, 677, 779
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 37, 285, 502, 520, 679
LmnI GCTCC 1 cut(s) 435
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 68, 836
MaeII ACGT 2 cut(s) 123, 442
MaeIII GTNAC 1 cut(s) 766
MalI GATC 5 cut(s) 39, 287, 504, 522, 681
MboI GATC 5 cut(s) 37, 285, 502, 520, 679
MboII GAAGA 7 cut(s) 225, 308, 334, 762, 797, 800, 875
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 3 cut(s) 87, 440, 884
MluCI AATT 1 cut(s) 400
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 839
Mph1103I ATGCAT 1 cut(s) 358
MslI CAYNNNNRTG 3 cut(s) 631, 712, 887
MspI CCGG 4 cut(s) 28, 47, 329, 893
MspR9I CCNGG 5 cut(s) 47, 546, 700, 747, 894
MvaI CCWGG 3 cut(s) 546, 700, 747
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 126, 362, 367, 832
NciI CCSGG 2 cut(s) 47, 894
NdeII GATC 5 cut(s) 37, 285, 502, 520, 679
NlaIII CATG 5 cut(s) 360, 378, 497, 677, 779
NlaIV GGNNCC 2 cut(s) 504, 649
NmuCI GTSAC 1 cut(s) 766
NruI TCGCGA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 2 cut(s) 677, 779
PciI ACATGT 1 cut(s) 775
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 699
PfoI TCCNGGA 1 cut(s) 745
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 443
PscI ACATGT 1 cut(s) 775
Psp124BI GAGCTC 2 cut(s) 87, 440
Psp6I CCWGG 3 cut(s) 544, 698, 745
PspGI CCWGG 3 cut(s) 544, 698, 745
PspN4I GGNNCC 2 cut(s) 504, 649
PspPI GGNCC 2 cut(s) 647, 732
PstNI CAGNNNCTG 1 cut(s) 699
PsuI RGATCY 1 cut(s) 502
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 6 cut(s) 209, 232, 373, 570, 756, 774
RsaNI GTAC 6 cut(s) 208, 231, 372, 569, 755, 773
RseI CAYNNNNRTG 3 cut(s) 631, 712, 887
SacI GAGCTC 2 cut(s) 87, 440
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 5 cut(s) 37, 285, 502, 520, 679
Sau96I GGNCC 2 cut(s) 647, 732
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 5 cut(s) 47, 546, 700, 747, 894
SduI GDGCHC 3 cut(s) 87, 440, 884
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 759
SinI GGWCC 1 cut(s) 647
SmiMI CAYNNNNRTG 3 cut(s) 631, 712, 887
Sse9I AATT 1 cut(s) 400
SsiI CCGC 1 cut(s) 506
SspI AATATT 1 cut(s) 805
SspMI CTAG 2 cut(s) 68, 836
SstI GAGCTC 2 cut(s) 87, 440
StyD4I CCNGG 5 cut(s) 45, 544, 698, 745, 892
TaaI ACNGT 4 cut(s) 292, 566, 772, 794
TaiI ACGT 2 cut(s) 126, 445
TaqI TCGA 2 cut(s) 192, 577
TasI AATT 1 cut(s) 400
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 189
TscAI CASTG 5 cut(s) 180, 297, 571, 700, 833
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 4 cut(s) 162, 465, 497, 876
TspRI CASTG 5 cut(s) 180, 297, 571, 700, 833
Van91I CCANNNNNTGG 1 cut(s) 699
VneI GTGCAC 1 cut(s) 880
VpaK11BI GGWCC 1 cut(s) 647
XceI RCATGY 2 cut(s) 677, 779
XspI CTAG 2 cut(s) 68, 836
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.