RchiOBHm_Chr2g0139391

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000630
Physical Location & Seq
Reverse (-)
57005831 .. 57007635
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50996

Sequence Viewer

Length: 459 bp
ATGTCCAGCTGCGTTATGATGGGATTCGACTCTTTGTTCTTGTACAGAAGATTATACAGGTGTCATACCACATTGGATGGTTTTTCTTTTGACAATGGGAATGTGGAAAGAAAGGACCAGATCACATTGGAAGAGTTTTCTTGTGATTATGATGGGAAGAAACCGGTTTTGCTCACTGGATTAGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGGAGCTCACGTAAAATCTCAATGACATTCAAGGATTATGTTTCATATTTGAAGGTTCAGCATGATGAAGATCCGCTTTATATCTTTGATCACAAGTTTGGAGAGGTTCAACCTGGCTTGTTGAAAGATTACAGTGTACCTTATCTATTTCAAGAGGATTTTTTTGATGTCTGGTGCTTCTTGGCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

152

Amino Acids

17.91

Weight (kDa)

5.28

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 341
AclWI GGATC 1 cut(s) 332
AfaI GTAC 3 cut(s) 44, 208, 405
AgeI ACCGGT 1 cut(s) 163
AgsI TTSAA 6 cut(s) 256, 298, 319, 377, 391, 419
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 4 cut(s) 9, 185, 251, 273
AluI AGCT 4 cut(s) 9, 185, 251, 273
Alw21I GWGCWC 1 cut(s) 275
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 115
AvaII GGWCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 275
BccI CCATC 3 cut(s) 13, 71, 146
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 336
BseNI ACTGG 1 cut(s) 181
BshFI GGCC 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 164
BsnI GGCC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 275
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 120, 337, 355
BspACI CCGC 1 cut(s) 341
BspANI GGCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 163
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 163
BssMI GATC 3 cut(s) 120, 337, 355
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 197
BstAUI TGTACA 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 198
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 3 cut(s) 123, 340, 358
BstMBI GATC 3 cut(s) 120, 337, 355
BstMWI GCNNNNNNNGC 2 cut(s) 197, 202
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 174, 406
Cac8I GCNNGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 3 cut(s) 43, 207, 404
CspAI ACCGGT 1 cut(s) 163
CviAII CATG 4 cut(s) 192, 210, 329, 453
CviJI RGCY 6 cut(s) 9, 185, 196, 251, 273, 384
CviKI_1 RGCY 6 cut(s) 9, 185, 196, 251, 273, 384
CviQI GTAC 3 cut(s) 43, 207, 404
DpnI GATC 3 cut(s) 122, 339, 357
DpnII GATC 3 cut(s) 120, 337, 355
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 275
FaeI CATG 4 cut(s) 195, 213, 332, 456
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 4 cut(s) 191, 209, 328, 452
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 164
Hin1II CATG 4 cut(s) 195, 213, 332, 456
HinfI GANTC 2 cut(s) 24, 29
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 404
Hpy188III TCNNGA 2 cut(s) 256, 419
Hpy8I GTNNAC 1 cut(s) 404
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 191, 200, 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 202
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 4 cut(s) 195, 213, 332, 456
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 120, 337, 355
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 9 cut(s) 19, 43, 131, 162, 177, 210, 366, 393, 424
LweI GCATC 1 cut(s) 178
MaeII ACGT 1 cut(s) 277
MalI GATC 3 cut(s) 122, 339, 357
MboI GATC 3 cut(s) 120, 337, 355
MboII GAAGA 4 cut(s) 60, 143, 169, 347
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 1 cut(s) 235
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 2 cut(s) 364, 415
Mph1103I ATGCAT 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 197, 202
NdeII GATC 3 cut(s) 120, 337, 355
NlaIII CATG 4 cut(s) 195, 213, 332, 456
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 456
PfeI GAWTC 1 cut(s) 24
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspPI GGNCC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 3 cut(s) 44, 208, 405
RsaNI GTAC 3 cut(s) 43, 207, 404
SacI GAGCTC 1 cut(s) 275
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 3 cut(s) 120, 337, 355
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 115
Sse9I AATT 1 cut(s) 235
SsiI CCGC 1 cut(s) 341
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 235
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 24
TscAI CASTG 2 cut(s) 181, 406
TseI GCWGC 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 300, 348
TspRI CASTG 2 cut(s) 181, 406
VpaK11BI GGWCC 1 cut(s) 115
XceI RCATGY 1 cut(s) 456
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.