RLG00000000857

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000630
Physical Location & Seq
Forward (+)
6675461 .. 6811499
136039 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000857

Sequence Viewer

Length: 1197 bp
ATGGATGAAAGTGTGATGTATATATTTTGCAATGAAGAGCCACTCTGGTTGAGTCTATGCCTCAACACACTGAATGGTCCGCTCCAGTACAAAGGATCGTGGAAGAAGACTGTGCTGCATTTATATGCGTTTGTCATTGCCTATCTACTTGGTGCAGGATTCGACTCTTTGTTCTTGTACAGAAGATTATACAGGTGTCATACCACATTGGATGGTTTTTCTTTTGACAATGGGAATGTGGAAAGAAAGGACAAGATCACATTGGAAGAGTTTTCTTGTGATTATGATGGGAAGAAACCGGTTTTGCTCACTGGATTAGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATGGAGATACAGCTTTCAAGATTTCTCAAAGGAGCTCACGTAAAATCTCAATGACATTCAAGGATTATGTTTCATATATGAAGGTTCAGCATGATGAGGATCCGCTTTATATCTTTGATCACAAGTTTGGAGAGGTTGAACCTGGCTTGTTGAAAGATTACAGTAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACCAGTGCCTGGAATACACTTCTATGTGGTCGTAAAAGGTGGGCCTTGTATCCTCCAGGAAGAGTACCTATAGGTGTCACAGTAAATGTAAACGAAGAAGACGGTGATGTCAATATTGAAACTCCAACTTCGTTGCAGTGGTGGCTAGATTTTTATCCACTTCTTGCTGATGAAGACAAGCCCATTGAGTGCACCCAAATGCCGGGGGAGACGATTTTCGTTCCTAGTGGATGTTGGCACTGTGTCCTAAATCTTGAACCATCTATTGCTGTTACCCAGAACTTTGTAAATTCTAAGAACTTTGAATTTGTGTGCTTGGATATGGCACCTGGTTATCGTCATAAGGGAGTTTGCCGTGCTGGATTACTTGCAGACAATGAAGGCAGTATTGAGGATTCCACAAATCATATACTCTATGATAAAGATGATTATAATTCCTCAGATATGACTAGGAAAGTAAAAAGAGTCAGAACTCTCAAACCTGGAGAATATCCAAGTAGTGAAAGAAGTAGTAATGCTGCTCAGGGTTTTTCTTATGATGTAAATTTCTTAGCCATGTATCTGGATGAAGAGAGGGATCATTACAACTCTCCTTGGAGCTCAGGCAATTGCATGGGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

399

Amino Acids

45.56

Weight (kDa)

5.21

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 180 - 286 9.6e-13 JmjC domain, hydroxylase
Cupin_8 PF13621 181 - 289 1.4e-09 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1005
AasI GACNNNNNNGTC 1 cut(s) 680
AccB1I GGYRCC 1 cut(s) 898
AccB7I CCANNNNNTGG 1 cut(s) 582
AccBSI CCGCTC 1 cut(s) 82
AciI CCGC 2 cut(s) 80, 476
AclWI GGATC 5 cut(s) 103, 467, 480, 557, 1158
AcsI RAATTY 3 cut(s) 862, 878, 1117
AfaI GTAC 4 cut(s) 89, 179, 343, 639
AfiI CCNNNNNNNGG 2 cut(s) 582, 775
AgeI ACCGGT 1 cut(s) 298
AgsI TTSAA 7 cut(s) 391, 433, 512, 526, 692, 830, 878
AjnI CCWGG 5 cut(s) 514, 581, 628, 901, 1054
AluBI AGCT 5 cut(s) 320, 386, 408, 569, 1173
AluI AGCT 5 cut(s) 320, 386, 408, 569, 1173
Alw21I GWGCWC 3 cut(s) 410, 767, 1175
Alw26I GTCTC 1 cut(s) 776
Alw44I GTGCAC 1 cut(s) 763
AlwI GGATC 5 cut(s) 103, 467, 480, 557, 1158
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 2 cut(s) 329, 615
ApaLI GTGCAC 1 cut(s) 763
ApeKI GCWGC 2 cut(s) 115, 1091
ApoI RAATTY 3 cut(s) 862, 878, 1117
AsiGI ACCGGT 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 77, 615
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 1 cut(s) 689
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 767
BamHI GGATCC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 898
BanII GRGCYC 2 cut(s) 410, 1175
BbsI GAAGAC 3 cut(s) 113, 678, 753
Bbv12I GWGCWC 3 cut(s) 410, 767, 1175
BbvI GCAGC 2 cut(s) 102, 1078
BccI CCATC 3 cut(s) 206, 281, 841
BceAI ACGGC 1 cut(s) 912
BciT130I CCWGG 5 cut(s) 516, 583, 630, 903, 1056
BciVI GTATCC 1 cut(s) 633
BclI TGATCA 1 cut(s) 490
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 1 cut(s) 776
BfaI CTAG 3 cut(s) 719, 798, 1023
BfmI CTRYAG 1 cut(s) 642
BfuI GTATCC 1 cut(s) 633
BglI GCCNNNNNGGC 1 cut(s) 337
BisI GCNGC 2 cut(s) 116, 1092
BlsI GCNGC 2 cut(s) 117, 1093
Bme1390I CCNGG 6 cut(s) 516, 583, 630, 777, 903, 1056
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 77, 615
BmiI GGNNCC 2 cut(s) 474, 900
BmrFI CCNGG 6 cut(s) 516, 583, 630, 777, 903, 1056
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 3 cut(s) 113, 678, 753
BpmI CTGGAG 3 cut(s) 68, 612, 1077
Bpu10I CCTNAGC 2 cut(s) 1095, 1174
BpuMI CCSGG 1 cut(s) 777
BsaAI YACGTR 1 cut(s) 413
BsaBI GATNNNNATC 2 cut(s) 471, 726
BsaJI CCNNGG 2 cut(s) 776, 1166
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 582, 775
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 3 cut(s) 85, 316, 576
Bse3DI GCAATG 2 cut(s) 37, 135
Bse8I GATNNNNATC 2 cut(s) 471, 726
BseBI CCWGG 5 cut(s) 516, 583, 630, 903, 1056
BseDI CCNNGG 2 cut(s) 776, 1166
BseGI GGATG 4 cut(s) 10, 217, 809, 1144
BseJI GATNNNNATC 2 cut(s) 471, 726
BseLI CCNNNNNNNGG 2 cut(s) 582, 775
BseMI GCAATG 2 cut(s) 37, 135
BseMII CTCAG 3 cut(s) 1026, 1109, 1188
BseNI ACTGG 3 cut(s) 85, 316, 576
BseSI GKGCMC 1 cut(s) 767
BseXI GCAGC 2 cut(s) 102, 1078
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 2 cut(s) 331, 617
BshNI GGYRCC 1 cut(s) 898
BshTI ACCGGT 1 cut(s) 298
BsiHKAI GWGCWC 3 cut(s) 410, 767, 1175
BsiSI CCGG 2 cut(s) 299, 776
BslI CCNNNNNNNGG 2 cut(s) 582, 775
BsmAI GTCTC 1 cut(s) 776
BsmBI CGTCTC 1 cut(s) 776
BsnI GGCC 2 cut(s) 331, 617
Bsp1286I GDGCHC 3 cut(s) 410, 767, 1175
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 6 cut(s) 95, 255, 472, 490, 562, 1150
BspACI CCGC 2 cut(s) 80, 476
BspANI GGCC 2 cut(s) 331, 617
BspCNI CTCAG 3 cut(s) 1025, 1108, 1187
BspLI GGNNCC 2 cut(s) 474, 900
BspPI GGATC 5 cut(s) 103, 467, 480, 557, 1158
BspQI GCTCTTC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 898
BsrBI CCGCTC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 37, 135
BsrFI RCCGGY 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 3 cut(s) 85, 316, 576
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 776, 1166
BssMI GATC 6 cut(s) 95, 255, 472, 490, 562, 1150
BssT1I CCWWGG 1 cut(s) 1166
Bst2UI CCWGG 5 cut(s) 516, 583, 630, 903, 1056
Bst4CI ACNGT 5 cut(s) 112, 536, 655, 677, 815
Bst6I CTCTTC 4 cut(s) 30, 261, 628, 1137
BstAPI GCANNNNNTGC 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 5 cut(s) 867, 1012, 1095, 1123, 1174
BstF5I GGATG 4 cut(s) 10, 217, 809, 1144
BstKTI GATC 6 cut(s) 98, 258, 475, 493, 565, 1153
BstMAI GTCTC 1 cut(s) 776
BstMBI GATC 6 cut(s) 95, 255, 472, 490, 562, 1150
BstMWI GCNNNNNNNGC 3 cut(s) 332, 337, 715
BstNI CCWGG 5 cut(s) 516, 583, 630, 903, 1056
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 6 cut(s) 514, 581, 628, 775, 901, 1054
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 1 cut(s) 767
BstV1I GCAGC 2 cut(s) 102, 1078
BstV2I GAAGAC 3 cut(s) 113, 678, 753
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 1135
BstYI RGATCY 1 cut(s) 472
BsuI GTATCC 1 cut(s) 633
BsuRI GGCC 2 cut(s) 331, 617
BtsCI GGATG 4 cut(s) 10, 217, 809, 1144
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 5 cut(s) 68, 309, 583, 716, 811
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 582
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 77, 615
CsiI ACCWGGT 1 cut(s) 901
Csp6I GTAC 4 cut(s) 88, 178, 342, 638
CspAI ACCGGT 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 6 cut(s) 327, 345, 464, 557, 1129, 1186
CviQI GTAC 4 cut(s) 88, 178, 342, 638
DdeI CTNAG 5 cut(s) 867, 1012, 1095, 1123, 1174
DpnI GATC 6 cut(s) 97, 257, 474, 492, 564, 1152
DpnII GATC 6 cut(s) 95, 255, 472, 490, 562, 1150
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
Eam1104I CTCTTC 4 cut(s) 30, 261, 628, 1137
EarI CTCTTC 4 cut(s) 30, 261, 628, 1137
Ecl136II GAGCTC 2 cut(s) 408, 1173
Eco130I CCWWGG 1 cut(s) 1166
Eco24I GRGCYC 2 cut(s) 410, 1175
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 2 cut(s) 408, 1173
EcoICRI GAGCTC 2 cut(s) 408, 1173
EcoRII CCWGG 5 cut(s) 514, 581, 628, 901, 1054
EcoT14I CCWWGG 1 cut(s) 1166
EcoT22I ATGCAT 1 cut(s) 328
EcoT38I GRGCYC 2 cut(s) 410, 1175
ErhI CCWWGG 1 cut(s) 1166
Esp3I CGTCTC 1 cut(s) 776
FaeI CATG 6 cut(s) 330, 348, 467, 560, 1132, 1189
FatI CATG 6 cut(s) 326, 344, 463, 556, 1128, 1185
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 116, 1092
FokI GGATG 4 cut(s) 17, 224, 816, 1151
FriOI GRGCYC 2 cut(s) 410, 1175
Fsp4HI GCNGC 2 cut(s) 116, 1092
FspBI CTAG 3 cut(s) 719, 798, 1023
GluI GCNGC 2 cut(s) 116, 1092
GsuI CTGGAG 3 cut(s) 68, 612, 1077
HaeIII GGCC 2 cut(s) 331, 617
HapII CCGG 2 cut(s) 299, 776
Hin1II CATG 6 cut(s) 330, 348, 467, 560, 1132, 1189
HinfI GANTC 5 cut(s) 52, 159, 164, 968, 1038
HpaII CCGG 2 cut(s) 299, 776
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 2 cut(s) 664, 765
Hpy188I TCNGA 3 cut(s) 573, 1015, 1043
Hpy188III TCNNGA 3 cut(s) 391, 827, 1136
Hpy8I GTNNAC 2 cut(s) 664, 765
HpyAV CCTTC 2 cut(s) 448, 947
HpyCH4III ACNGT 5 cut(s) 112, 536, 655, 677, 815
HpyCH4IV ACGT 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 337, 715
HpyF3I CTNAG 5 cut(s) 867, 1012, 1095, 1123, 1174
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 6 cut(s) 330, 348, 467, 560, 1132, 1189
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 6 cut(s) 95, 255, 472, 490, 562, 1150
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 3 cut(s) 87, 405, 1170
Lsp1109I GCAGC 2 cut(s) 102, 1078
LweI GCATC 1 cut(s) 313
MabI ACCWGGT 1 cut(s) 901
MaeI CTAG 3 cut(s) 719, 798, 1023
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 649, 844
MalI GATC 6 cut(s) 97, 257, 474, 492, 564, 1152
MbiI CCGCTC 1 cut(s) 82
MboI GATC 6 cut(s) 95, 255, 472, 490, 562, 1150
MfeI CAATTG 1 cut(s) 1180
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 3 cut(s) 410, 767, 1175
MluCI AATT 6 cut(s) 370, 862, 878, 1006, 1117, 1180
MlyI GAGTC 3 cut(s) 61, 158, 1047
MmeI TCCRAC 1 cut(s) 722
MnlI CCTC 7 cut(s) 71, 463, 499, 636, 958, 1021, 1140
Mph1103I ATGCAT 1 cut(s) 328
MslI CAYNNNNRTG 3 cut(s) 123, 595, 770
MspI CCGG 2 cut(s) 299, 776
MspR9I CCNGG 6 cut(s) 516, 583, 630, 777, 903, 1056
MunI CAATTG 1 cut(s) 1180
MvaI CCWGG 5 cut(s) 516, 583, 630, 903, 1056
MwoI GCNNNNNNNGC 3 cut(s) 332, 337, 715
NciI CCSGG 1 cut(s) 777
NdeII GATC 6 cut(s) 95, 255, 472, 490, 562, 1150
NlaIII CATG 6 cut(s) 330, 348, 467, 560, 1132, 1189
NlaIV GGNNCC 2 cut(s) 474, 900
NmuCI GTSAC 1 cut(s) 649
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 1 cut(s) 560
PciSI GCTCTTC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 159, 968
PflMI CCANNNNNTGG 1 cut(s) 582
PfoI TCCNGGA 1 cut(s) 628
PinAI ACCGGT 1 cut(s) 298
PkrI GCNGC 2 cut(s) 117, 1093
PleI GAGTC 3 cut(s) 60, 158, 1046
PpsI GAGTC 3 cut(s) 60, 158, 1046
Ppu21I YACGTR 1 cut(s) 413
PsiI TTATAA 1 cut(s) 1005
Psp124BI GAGCTC 2 cut(s) 410, 1175
Psp6I CCWGG 5 cut(s) 514, 581, 628, 901, 1054
PspGI CCWGG 5 cut(s) 514, 581, 628, 901, 1054
PspN4I GGNNCC 2 cut(s) 474, 900
PspPI GGNCC 2 cut(s) 77, 615
PstNI CAGNNNCTG 1 cut(s) 582
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 4 cut(s) 89, 179, 343, 639
RsaNI GTAC 4 cut(s) 88, 178, 342, 638
RseI CAYNNNNRTG 3 cut(s) 123, 595, 770
SacI GAGCTC 2 cut(s) 410, 1175
SapI GCTCTTC 1 cut(s) 30
SatI GCNGC 2 cut(s) 116, 1092
Sau3AI GATC 6 cut(s) 95, 255, 472, 490, 562, 1150
Sau96I GGNCC 2 cut(s) 77, 615
SchI GAGTC 3 cut(s) 61, 158, 1047
ScrFI CCNGG 6 cut(s) 516, 583, 630, 777, 903, 1056
SduI GDGCHC 3 cut(s) 410, 767, 1175
SexAI ACCWGGT 1 cut(s) 901
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 642
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 123, 595, 770
Sse9I AATT 6 cut(s) 370, 862, 878, 1006, 1117, 1180
SsiI CCGC 2 cut(s) 80, 476
SspI AATATT 1 cut(s) 688
SspMI CTAG 3 cut(s) 719, 798, 1023
SstI GAGCTC 2 cut(s) 410, 1175
StyD4I CCNGG 6 cut(s) 514, 581, 628, 775, 901, 1054
StyI CCWWGG 1 cut(s) 1166
TaaI ACNGT 5 cut(s) 112, 536, 655, 677, 815
TaiI ACGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 162
TasI AATT 6 cut(s) 370, 862, 878, 1006, 1117, 1180
TatI WGTACW 2 cut(s) 87, 177
TfiI GAWTC 2 cut(s) 159, 968
TscAI CASTG 5 cut(s) 75, 316, 583, 716, 818
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 2 cut(s) 115, 1091
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 7 cut(s) 21, 48, 435, 467, 759, 966, 1155
TspRI CASTG 5 cut(s) 75, 316, 583, 716, 818
Van91I CCANNNNNTGG 1 cut(s) 582
VneI GTGCAC 1 cut(s) 763
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 3 cut(s) 862, 878, 1117
XceI RCATGY 1 cut(s) 560
XspI CTAG 3 cut(s) 719, 798, 1023
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.