Rh7AG473900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000630
Physical Location & Seq
Reverse (-)
65737009 .. 65739418
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG473900.1

Sequence Viewer

Length: 1155 bp
ATGGCACCTGGTTATCGTCATAAGGGAGTTTGCCGTGCTGGATTACTTGCAGATGATGAAGGCGGTATTGAGGATTCAACAAATCATATTCTCTATGATAAAGATGATTATAATTCCTCAGATATGACTAGGAAAGTAAAAAGAGTCAGAACTCTCAAACCTGGAGAATATCCTAGTAGTGAAAGAACTAGTAATGGTGCTCAGGGTTTCTCTTATGATGTAAATTTCTTAGCCATGTATCTGGATGAAAAGAGAGATCATTACAACTCTCCTTGGAGCTCAGGAAATTGCATAGGGCAACGAGAAATGAGAGAATGGTTACTCAAGCTTTGGGTTGGAAAACCAGGAATGAGAGACTTGATGTGGAAGGGAGCATGTCTTGCACTAAATGCTAGCAAATGGTCAGAATCCCTGGCAAAAATATATGCAGAGTTAAGAGATACTGTGTCACGGGAAGATGAACTGAACTTAGCTTCCTTCCTGGGAGAGCAGCTCCGTAACCTCCATCTCTTGCCCCATCCACCTCTTAATATCTCAACTTTCTCAGATATTGAACAGGGATCAGATTTTCCATTCACCAACGGTAGTATGGAAGCTGTTCCCCATAAATCAAACATTCCTGCTGAGTGGGATATATTCATTAGGACTCTATTCAAGAAGAAGAAGGATGTCTCAAGTCGCTTGATTAAATGGGGAGATCCAATTCCTAGCACACTCATAGAGAAAGTTGACAAGTACATCCCAGATGATTTTGCCAAGTTTCTGTACATGTTCAAGGATGAAAATGGTGTAAGCAAAGTTGGTAAAAGTTGTTCGTGGATACACTCTGATATCATGGATGACAACATTCACATGGAACTATGTGGTTTTAATTCTTGCTTCATTGGCAACGCCAAAGACACTTGCCTGGTAAATAATGGTTCCTTGAATGTTGATGGTGACCATGCAGAGAGGAAAACATGGTGCCCTAGCCACATTCTTGATTTCAGTAATCTTTCTATAGGTGATCCCATCTATGATTTGATACCCTTATACTTGGATATATTCAGAGGTGATTGCTACCTCCTTAAGCAATTTCTAGATAGTTATAAACTTCCTTTAGTAAGACAAGCATCACCTCATGAGGATATGGAGGGTGGCGACAAGTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

384

Amino Acids

43.68

Weight (kDa)

5.52

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 111, 1089
AccB1I GGYRCC 2 cut(s) 4, 963
AciI CCGC 1 cut(s) 63
AclWI GGATC 3 cut(s) 568, 692, 1001
AcsI RAATTY 1 cut(s) 223
AfaI GTAC 2 cut(s) 737, 767
AflII CTTAAG 1 cut(s) 1067
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 5 cut(s) 78, 554, 655, 775, 928
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 6 cut(s) 7, 160, 343, 411, 480, 906
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 5 cut(s) 279, 328, 473, 493, 596
AluI AGCT 5 cut(s) 279, 328, 473, 493, 596
Alw21I GWGCWC 2 cut(s) 202, 281
Alw26I GTCTC 2 cut(s) 348, 676
AlwI GGATC 3 cut(s) 568, 692, 1001
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 597
AsuHPI GGTGA 5 cut(s) 568, 950, 1016, 1064, 1107
AsuNHI GCTAGC 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 968
BanI GGYRCC 2 cut(s) 4, 963
BanII GRGCYC 1 cut(s) 281
Bbv12I GWGCWC 2 cut(s) 202, 281
BbvI GCAGC 1 cut(s) 502
BccI CCATC 4 cut(s) 513, 525, 929, 1019
BceAI ACGGC 1 cut(s) 18
BciT130I CCWGG 6 cut(s) 9, 162, 345, 413, 482, 908
BciVI GTATCC 1 cut(s) 813
BcoDI GTCTC 2 cut(s) 348, 676
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 7 cut(s) 129, 174, 189, 393, 708, 969, 1079
BfmI CTRYAG 1 cut(s) 999
BfrI CTTAAG 1 cut(s) 1067
BfuI GTATCC 1 cut(s) 813
BisI GCNGC 1 cut(s) 491
BlsI GCNGC 1 cut(s) 492
Bme1390I CCNGG 6 cut(s) 9, 162, 345, 413, 482, 908
BmiI GGNNCC 3 cut(s) 6, 922, 965
BmrFI CCNGG 6 cut(s) 9, 162, 345, 413, 482, 908
BmsI GCATC 1 cut(s) 1121
BmtI GCTAGC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 477, 509
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 2 cut(s) 201, 280
BpuEI CTTGAG 2 cut(s) 308, 658
BsaJI CCNNGG 3 cut(s) 272, 411, 481
BseBI CCWGG 6 cut(s) 9, 162, 345, 413, 482, 908
BseDI CCNNGG 3 cut(s) 272, 411, 481
BseGI GGATG 6 cut(s) 250, 517, 673, 738, 784, 844
BseMII CTCAG 5 cut(s) 132, 215, 294, 558, 615
BseSI GKGCMC 1 cut(s) 968
BseXI GCAGC 1 cut(s) 502
BshNI GGYRCC 2 cut(s) 4, 963
BsiHKAI GWGCWC 2 cut(s) 202, 281
BsmAI GTCTC 2 cut(s) 348, 676
Bsp1286I GDGCHC 3 cut(s) 202, 281, 968
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 4 cut(s) 256, 560, 697, 1006
BspACI CCGC 1 cut(s) 63
BspCNI CTCAG 5 cut(s) 131, 214, 293, 557, 616
BspHI TCATGA 1 cut(s) 1120
BspLI GGNNCC 3 cut(s) 6, 922, 965
BspOI GCTAGC 1 cut(s) 396
BspPI GGATC 3 cut(s) 568, 692, 1001
BspT107I GGYRCC 2 cut(s) 4, 963
BspTI CTTAAG 1 cut(s) 1067
BsrGI TGTACA 1 cut(s) 765
BssECI CCNNGG 3 cut(s) 272, 411, 481
BssMI GATC 4 cut(s) 256, 560, 697, 1006
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 6 cut(s) 9, 162, 345, 413, 482, 908
Bst4CI ACNGT 2 cut(s) 445, 584
BstAFI CTTAAG 1 cut(s) 1067
BstAPI GCANNNNNTGC 2 cut(s) 380, 389
BstAUI TGTACA 1 cut(s) 765
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 7 cut(s) 118, 201, 229, 280, 469, 544, 624
BstEII GGTNACC 1 cut(s) 938
BstF5I GGATG 6 cut(s) 250, 517, 673, 738, 784, 844
BstKTI GATC 4 cut(s) 259, 563, 700, 1009
BstMAI GTCTC 2 cut(s) 348, 676
BstMBI GATC 4 cut(s) 256, 560, 697, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 380, 389, 885
BstNI CCWGG 6 cut(s) 9, 162, 345, 413, 482, 908
BstNSI RCATGY 2 cut(s) 378, 772
BstPI GGTNACC 1 cut(s) 938
BstSCI CCNGG 6 cut(s) 7, 160, 343, 411, 480, 906
BstSFI CTRYAG 1 cut(s) 999
BstSLI GKGCMC 1 cut(s) 968
BstV1I GCAGC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 697
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 697
BsuI GTATCC 1 cut(s) 813
BtsCI GGATG 6 cut(s) 250, 517, 673, 738, 784, 844
Cac8I GCNNGC 1 cut(s) 394
CciI TCATGA 1 cut(s) 1120
CsiI ACCWGGT 1 cut(s) 7
Csp6I GTAC 2 cut(s) 736, 766
CviAII CATG 8 cut(s) 235, 375, 769, 835, 853, 944, 960, 1121
CviJI RGCY 7 cut(s) 233, 279, 328, 473, 493, 596, 972
CviKI_1 RGCY 7 cut(s) 233, 279, 328, 473, 493, 596, 972
CviQI GTAC 2 cut(s) 736, 766
DdeI CTNAG 7 cut(s) 118, 201, 229, 280, 469, 544, 624
DpnI GATC 4 cut(s) 258, 562, 699, 1008
DpnII GATC 4 cut(s) 256, 560, 697, 1006
Ecl136II GAGCTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 281
Eco32I GATATC 1 cut(s) 832
Eco53kI GAGCTC 1 cut(s) 279
Eco91I GGTNACC 1 cut(s) 938
EcoICRI GAGCTC 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 938
EcoRII CCWGG 6 cut(s) 7, 160, 343, 411, 480, 906
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 8 cut(s) 238, 378, 772, 838, 856, 947, 963, 1124
FatI CATG 8 cut(s) 234, 374, 768, 834, 852, 943, 959, 1120
Fnu4HI GCNGC 1 cut(s) 491
FokI GGATG 6 cut(s) 257, 504, 680, 725, 791, 851
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 491
FspBI CTAG 7 cut(s) 129, 174, 189, 393, 708, 969, 1079
GluI GCNGC 1 cut(s) 491
GsuI CTGGAG 1 cut(s) 183
Hin1II CATG 8 cut(s) 238, 378, 772, 838, 856, 947, 963, 1124
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 74, 144, 407, 646
HphI GGTGA 5 cut(s) 568, 950, 1016, 1064, 1107
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 7 cut(s) 121, 149, 406, 547, 565, 829, 1049
Hpy188III TCNNGA 6 cut(s) 242, 282, 655, 980, 1079, 1121
Hpy8I GTNNAC 1 cut(s) 730
HpyAV CCTTC 4 cut(s) 53, 361, 487, 658
HpyCH4III ACNGT 2 cut(s) 445, 584
HpyCH4V TGCA 5 cut(s) 50, 291, 383, 428, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 389, 885
HpyF3I CTNAG 7 cut(s) 118, 201, 229, 280, 469, 544, 624
Hsp92II CATG 8 cut(s) 238, 378, 772, 838, 856, 947, 963, 1124
Kzo9I GATC 4 cut(s) 256, 560, 697, 1006
LmnI GCTCC 3 cut(s) 276, 371, 498
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 1 cut(s) 1121
MabI ACCWGGT 1 cut(s) 7
MaeI CTAG 7 cut(s) 129, 174, 189, 393, 708, 969, 1079
MaeIII GTNAC 4 cut(s) 318, 447, 497, 938
MalI GATC 4 cut(s) 258, 562, 699, 1008
MboI GATC 4 cut(s) 256, 560, 697, 1006
MboII GAAGA 3 cut(s) 467, 670, 673
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 3 cut(s) 202, 281, 968
MluCI AATT 6 cut(s) 112, 223, 286, 702, 871, 1073
MlyI GAGTC 2 cut(s) 153, 640
MmeI TCCRAC 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 5 cut(s) 434, 528, 687, 870, 1068
MslI CAYNNNNRTG 1 cut(s) 851
MspCI CTTAAG 1 cut(s) 1067
MspR9I CCNGG 6 cut(s) 9, 162, 345, 413, 482, 908
MvaI CCWGG 6 cut(s) 9, 162, 345, 413, 482, 908
MwoI GCNNNNNNNGC 3 cut(s) 380, 389, 885
NdeII GATC 4 cut(s) 256, 560, 697, 1006
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 8 cut(s) 238, 378, 772, 838, 856, 947, 963, 1124
NlaIV GGNNCC 3 cut(s) 6, 922, 965
NmuCI GTSAC 2 cut(s) 447, 938
NspI RCATGY 2 cut(s) 378, 772
PagI TCATGA 1 cut(s) 1120
PciI ACATGT 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 74, 407
PkrI GCNGC 1 cut(s) 492
PleI GAGTC 2 cut(s) 152, 640
PpsI GAGTC 2 cut(s) 152, 640
PscI ACATGT 1 cut(s) 768
PsiI TTATAA 2 cut(s) 111, 1089
Psp124BI GAGCTC 1 cut(s) 281
Psp6I CCWGG 6 cut(s) 7, 160, 343, 411, 480, 906
PspEI GGTNACC 1 cut(s) 938
PspGI CCWGG 6 cut(s) 7, 160, 343, 411, 480, 906
PspN4I GGNNCC 3 cut(s) 6, 922, 965
PsrI GAACNNNNNNTAC 2 cut(s) 796, 828
PsuI RGATCY 1 cut(s) 697
RsaI GTAC 2 cut(s) 737, 767
RsaNI GTAC 2 cut(s) 736, 766
RseI CAYNNNNRTG 1 cut(s) 851
SacI GAGCTC 1 cut(s) 281
SaqAI TTAA 5 cut(s) 434, 528, 687, 870, 1068
SatI GCNGC 1 cut(s) 491
Sau3AI GATC 4 cut(s) 256, 560, 697, 1006
SchI GAGTC 2 cut(s) 153, 640
ScrFI CCNGG 6 cut(s) 9, 162, 345, 413, 482, 908
SduI GDGCHC 3 cut(s) 202, 281, 968
SexAI ACCWGGT 1 cut(s) 7
SfaNI GCATC 1 cut(s) 1121
SfcI CTRYAG 1 cut(s) 999
SmiMI CAYNNNNRTG 1 cut(s) 851
SmlI CTYRAG 3 cut(s) 323, 673, 1067
SmoI CTYRAG 3 cut(s) 323, 673, 1067
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 6 cut(s) 112, 223, 286, 702, 871, 1073
SsiI CCGC 1 cut(s) 63
SspMI CTAG 7 cut(s) 129, 174, 189, 393, 708, 969, 1079
SstI GAGCTC 1 cut(s) 281
StyD4I CCNGG 6 cut(s) 7, 160, 343, 411, 480, 906
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 445, 584
TasI AATT 6 cut(s) 112, 223, 286, 702, 871, 1073
TatI WGTACW 2 cut(s) 735, 765
TfiI GAWTC 2 cut(s) 74, 407
Tru1I TTAA 5 cut(s) 434, 528, 687, 870, 1068
Tru9I TTAA 5 cut(s) 434, 528, 687, 870, 1068
TseFI GTSAC 2 cut(s) 447, 938
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 2 cut(s) 447, 938
TspDTI ATGAA 6 cut(s) 72, 261, 474, 628, 795, 871
TspGWI ACGGA 1 cut(s) 485
Vha464I CTTAAG 1 cut(s) 1067
XapI RAATTY 1 cut(s) 223
XbaI TCTAGA 1 cut(s) 1078
XceI RCATGY 2 cut(s) 378, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 7 cut(s) 129, 174, 189, 393, 708, 969, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.