Rroxscaffold_4G00316290

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000630
Physical Location & Seq
Forward (+)
41077342 .. 41080826
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316290.1

Sequence Viewer

Length: 426 bp
ATGTATATAGTTTGCAATGAAGAGCCACTCTGGTTCAGTTTATGCCTCAACACACTGAATGGTCCGCTCCAGTACAAAGGCTCCTGGAAGAAGACGGTGCTGCATTTGGAGAATGTGTCGTATGAACGCGACGAGGCTTGCAGAAAACCACTGAGTTTTGATGGGTTCGACTCTTTGTTCTTGTACAGAAGATTATACAGGTGTCATACCACATTGGATGGTTTTTCTTTTGACAATGGGAATGTGGAAAGAAAGGACAAGATCACATTGGAAGAGTTTTCTTGTGGTTATGATGGGAAGAAACCGGTTTTGCTCACTGGATTAGCTGATGCATGGCCTGCAAGGCGGACATGGGCACTTGACCACTTTTTGCAGAATTATGGAGATACAGCGCGCTTTCAAGATTTCTCAAAGGAGCTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

141

Amino Acids

16.51

Weight (kDa)

5.91

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78280
fragaria_vesca FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800 FvH4_5g36800
malus_domestica MD08G1186800.v1.1 MD15G1372700.v1.1
prunus_persica Prupe.1G521300_v2.0.a1 Prupe.1G521300_v2.0.a1
pyrus_communis pycom08g16060 pycom15g33370
rosa_chinensis RchiOBHm_Chr2g0139391 RchiOBHm_Chr7g0242931 RchiOBHm_Chr7g0242951 RchiOBHm_Chr7g0243001 RchiOBHm_Chr7g0243011 RchiOBHm_Chr7g0243141 RchiOBHm_Chr7g0243151 RchiOBHm_Chr7g0243351
rosa_laevigata RLG00000000853 RLG00000000857 RLG00000000858 RLG00000000863 RLG00000000867
rosa_multiflora Rmu_co8457323.1_g000001 Rmu_sc0000083.1_g000017 Rmu_sc0000679.1_g000021 Rmu_sc0001036.1_g000029 Rmu_sc0001036.1_g000032 Rmu_sc0001176.1_g000015 Rmu_sc0001461.1_g000002 Rmu_sc0001461.1_g000003 Rmu_sc0001461.1_g000056 Rmu_sc0001461.1_g000057 Rmu_sc0001461.1_g000098 Rmu_sc0001461.1_g000105 Rmu_sc0004165.1_g000084 Rmu_sc0006141.1_g000004 Rmu_sc0033806.1_g000001
rosa_roxburghii Rroxscaffold_3G00222160 Rroxscaffold_3G00222220 Rroxscaffold_4G00316290
rosa_rugosa Rorug07G0318400 Rorug07G0318400 Rorug07G0318600
rosa_samantha Rh4CG066500 Rh5DG444300 Rh7AG473700 Rh7AG473900 Rh7AG474000 Rh7AG474600 Rh7AG474800 Rh7BG444500 Rh7BG444700 Rh7CG490700 Rh7CG490800 Rh7CG491000 Rh7DG458900 Rh7DG459000 Rh7DG459300
rosa_wichuraiana Rw7G038970 Rw7G039050 Rw7G039420 Rw7G039480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 2 cut(s) 129, 394
AciI CCGC 2 cut(s) 65, 346
AfaI GTAC 2 cut(s) 74, 185
AgeI ACCGGT 1 cut(s) 304
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 2 cut(s) 326, 418
AluI AGCT 2 cut(s) 326, 418
Alw21I GWGCWC 1 cut(s) 420
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 100
AsiGI ACCGGT 1 cut(s) 304
AspLEI GCGC 2 cut(s) 394, 396
AspS9I GGNCC 1 cut(s) 62
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 87
BccI CCATC 3 cut(s) 155, 212, 287
BciT130I CCWGG 1 cut(s) 85
BglI GCCNNNNNGGC 1 cut(s) 343
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 5 cut(s) 65, 95, 101, 131, 407
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 70, 322
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 70, 322
BsePI GCGCGC 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 2 cut(s) 129, 394
BshFI GGCC 1 cut(s) 337
BshTI ACCGGT 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 305
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 358, 420
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 2 cut(s) 65, 346
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 144
BspFNI CGCG 2 cut(s) 129, 394
BspLI GGNNCC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 2 cut(s) 70, 322
BssAI RCCGGY 1 cut(s) 304
BssHII GCGCGC 1 cut(s) 392
BssMI GATC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 15, 267
BstAPI GCANNNNNTGC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 139, 339, 394
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 2 cut(s) 129, 394
BstHHI GCGC 2 cut(s) 394, 396
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 338, 343
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 358
BstUI CGCG 2 cut(s) 129, 394
BstV1I GCAGC 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 3 cut(s) 53, 149, 315
Cac8I GCNNGC 3 cut(s) 139, 339, 394
CfoI GCGC 2 cut(s) 394, 396
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 73, 184
CspAI ACCGGT 1 cut(s) 304
CviAII CATG 2 cut(s) 333, 351
CviJI RGCY 6 cut(s) 25, 81, 137, 326, 337, 418
CviKI_1 RGCY 6 cut(s) 25, 81, 137, 326, 337, 418
CviQI GTAC 2 cut(s) 73, 184
DdeI CTNAG 1 cut(s) 152
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 15, 267
EarI CTCTTC 2 cut(s) 15, 267
EciI GGCGGA 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 418
EcoICRI GAGCTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 420
FaeI CATG 2 cut(s) 336, 354
FatI CATG 2 cut(s) 332, 350
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 101
GlaI GCGC 2 cut(s) 393, 395
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 337
HapII CCGG 1 cut(s) 305
HhaI GCGC 2 cut(s) 394, 396
Hin1II CATG 2 cut(s) 336, 354
Hin6I GCGC 2 cut(s) 392, 394
HinP1I GCGC 2 cut(s) 392, 394
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 305
Hpy188III TCNNGA 1 cut(s) 401
Hpy99I CGWCG 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 6 cut(s) 15, 103, 141, 332, 341, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 343
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 2 cut(s) 336, 354
HspAI GCGC 2 cut(s) 392, 394
Kzo9I GATC 1 cut(s) 261
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 3 cut(s) 72, 86, 415
LpnPI CCDG 8 cut(s) 16, 70, 83, 97, 184, 303, 318, 351
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 319
MaeII ACGT 1 cut(s) 422
MalI GATC 1 cut(s) 263
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 261
MboII GAAGA 6 cut(s) 32, 100, 103, 201, 284, 310
MhlI GDGCHC 2 cut(s) 358, 420
MluCI AATT 1 cut(s) 376
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 2 cut(s) 56, 127
Mph1103I ATGCAT 1 cut(s) 334
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 2 cut(s) 129, 394
MwoI GCNNNNNNNGC 2 cut(s) 338, 343
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 336, 354
NlaIV GGNNCC 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 334
PauI GCGCGC 1 cut(s) 392
PciSI GCTCTTC 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 83
PinAI ACCGGT 1 cut(s) 304
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 62
PteI GCGCGC 1 cut(s) 392
RsaI GTAC 2 cut(s) 74, 185
RsaNI GTAC 2 cut(s) 73, 184
SacI GAGCTC 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 15
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 2 cut(s) 358, 420
SetI ASST 4 cut(s) 203, 328, 420, 425
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 62
Sse9I AATT 1 cut(s) 376
SsiI CCGC 2 cut(s) 65, 346
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 168
TasI AATT 1 cut(s) 376
TatI WGTACW 2 cut(s) 72, 183
TscAI CASTG 3 cut(s) 60, 156, 322
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 33, 138
TspRI CASTG 3 cut(s) 60, 156, 322
VpaK11BI GGWCC 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.